Aspergillus Bibliography 2009

This bibliography attempts to cover genetical and biochemical publications on Aspergillus nidulans and also includes selected references to related species and topics. Entries have been checked as far as possible, but please tell me of any errors and omissions. Authors are kindly requested to send a copy of each article to the FGSC for its reprint collection.

John Clutterbuck. Faculty of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK. Email:


Keyword or Author cross references


1. Abenza, J.F., Pantazopoulou, A., RodrÌguez, J.M., Galindo, A. & PeÒalva, M.A. 2009 Long-distance movement of Aspergillus nidulans early endosomes on microtubule tracks. Traffic. 10:57-75

2. Adachi, H., Tani, S., Kanamasa. S., Sumitani, J.-i. & Kawaguchi, T. 2009 Development of a homologous transformation system for Aspergillus acuelatus base on the sC gene encoding ATP-sulphurylase. Biosci. Biotechnol. Biochem. 73:1197-1199

3. Amaike, S. & Keller, N.P. 2009 Distinct roles for VeA and LeaA in development and pathogenesis of Aspergillus flavus. Eukaryot. Cell 8:1051-1060

4. Andersen, M.R. & Nielsen, J. 2009 Current status of systems biology in Aspergilli. Fungal Genet. Biol. 46 suppl.1:S180-S190

5. Apostolaki, A., Erpapazoglou, Z., Harispe, L., Billini, M., Kafasla, P., Kizis, D., PeÒalva, M.A., Scazzocchio, C. & Sophianopoulou, V. 2009 AgtA, the dicarboxylic amino acid transporter of Aspergillus nidulans, is concertedly down-regulated by exquisite sensitivity to nitrogen metabolite repression and ammonium-elicited endocytosis. Eukaryot. Cell 8:339-352

6. Ara·jo-Baz·n, L., Dhingra, S., Chu, J., Fern·ndez-Martinez, J., Calvo, A.M. & Espeso, E.A. 2009 Importin a is an essential nuclear import carrier adaptor required for proper sexual and asexual development and secondary metabolism in Aspergillus nidulans. Fungal Genet. Biol. 46:506-515

7. Bacha, N., Dao, H.P., Atoul, A., Mathieu, F., O’Callaghan, J., Puel, O., Liboz, T., Dobson, A.D.W. & Lebrihi, A. 2009 Cloning and characterization of novel methylsalicylic acid synthase gene involved in the biosynthesis of isoasperlactone and asperlactone in Aspergillus westerdijkiae. Fungal Genet. Biol. 46:742-749

8. Bahn, Y.-S. 2008 Master and commander in fungal pathogens: the two component system and the HOG signaling pathway. Eukaryot. Cell 7:2017-2036

9. Balajee, S.A. 2009 Aspergillus terreus complex. Med. Mycol. 47, suppl1:S42-6

10. Basheer, A., Berger, H., Reyes-Dominguez, Y., Gorfer, M. & Strauss, J. 2009 A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions. Nucleic Acids Res. 37:e42

11. Basile, L.J., Willson, R.C., Sewell, B.T. & Benedik, M.J. 2008 Genome mining of cyanide-degrading nitrilases from filamentous fungi. Appl. Microbiol. Biotechnol. 80:427-435

12. Bayram, O., Sari F., Braus, G.H. & Irniger, S. 2009 The protein kinase ImeB is required for light-mediated inhibition of sexual development and for mycotoxin production in Aspergillus nidulans. Mol. Microbiol. 71:1278-1295

13. Bencina, M., Bagar, T., Lah, L. & Krasevec, N. 2009 A comparative genomic analysis of calcium and proton signaling/homeostasis in Aspergillus species. Fungal Genet. Biol. 46, Suppl. 1:S93-S104

14. Bennett, J.W. 2009 Aspergillus: a primer for the novice. Med. Mycol. 49 Suppl1:S5-12

15. Brandt, S., von Stetten, D., Gunther, M., Hildebrandt, P. & Frankenberg-Dinkel, N. 2008 The fungal phytochrome FphA from Aspergillus nidulans. J. Biol. Chem. 283:34605-34614

16. Brodhun, F., Gˆbel, C., Hornung, E. & Feussner, I. 2009 Identification of PpoA from Aspergillus nidulans as a fusion protein of a fatty acid heme dioxygenase/peroxidase and a cytochrome P450. J. Biol. Chem. 284:11792-11805

17. Cary, J.W., Ehrlich, K.C., Beltz, S.B., Harris-Coward, P. & Klich, M.A. 2009 Characterization of the Aspergillus ochraceoroseus aflatoxin/sterigmatocystin biosynthetic gene cluster. Mycologia 101:352-362

18. Chang, P.-K., Horn, B.W. & Dorner, J.W. 2009 Clustered genes involved in cyclopiazonic acid production are next to the aflatoxin biosynthesis gene cluster in Aspergillus flavus. Fungal Genet. Biol. 46:176-182

19. Charles, P., Devanathan, V., Anbu, P., Ponnuswamy, M.N., Kalaichelvan, P.T. & Hur, B.-K. 2008 Purification, characterization and crystallization of an extracellular alkaline protease from Aspergillus nidulans HA-10. J. Basic Microbiol. 48:347-352

20. Chilton, I.J., Delaney, C.E., Barham-Morris, J., Fincham, D.A., Hooley, P. & Whitehead, M.P. 2008 The Aspergillus nidulans stress response transcription factor StzA is ascomycete-specific and shows species-specific polymorphisms in the C-terminal region. Mycol. Res. 112:1435-1446

21. Christians, J.K. & Watt, C.A. 2009 Mononucleotide repeats represent an important source of polymorphic microsatellite markers in Aspergillus nidulans. Mol. Ecol. Resources 9:572-578

22. Coutinho, P.M., Andersen, M.R., Kolenova, K., vanKuyk, P.A., Benoit, I., Gruben, B.S., Trejo-Aguilar, B., Visser, H., van Solingen, P., Pakula, T., Seiboth, B., Battaglia, E., Aguilar-Osorio, G., de Jong, J.F., Ohm, R.A., Aguilar, M., Henrissat, B., Nielsen, J., StÂlbrand, H. & de Vries, R.P. 2009 Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genet. Biol. 46 suppl.1:S161-S169

23. de Groot, P.W.J., Brandt, B.W., Horiuchi, H., Ram, A.F.J., de Koster, C.G. & Klis, F.M. 2009 Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans. Fungal Genet, Biol. 46, Suppl. 1:S72-S81

24. de Sant'anna, J.R., da Silva Franco, C.C., Miyamoto, C.T., Cunico, M.M., Miguel, O.G., CÙcco, L.C., Yamamoto, C.I., Junior, C.C. & de Castro-Prado, M.A. 2009 Genotoxicity of Achillea millefolium essential oil in diploid cells of Aspergillus nidulans. Phytother. Res. 23:231-235

25. De Souza, C.P., Hashmi, S.B., Nayak, T., Oakley, B. & Osmani, S.A. 2009 Mip1 acts as a mitotic scaffold to spatially regulate spindle assembly checkpoint proteins in Aspergillus nidulans. Mol. Biol. Cell 20:2146-2159

26. Dellepiane, RM., Tortorano, A.M., Liotto, N., Laicini, E., Di Landro, G., Carnelli, V. & Pietrogrande, M.C. 2008 Invasive Aspergillus nidulans infection in a patient with chronic granulomatous disease. Mycoses. 51:458-460

27. Duarte-Escalante, E., Z·Òiga, G., RamÌrez, O.N., CÛrdoba, S., Refojo, N., Arenas, R., Delhaes, L. & Reyes-Montes, M. de R. 2009 Population structure and diversity of the pathogenic fungus Aspergillus fumigatus isolated from different sources and geographic origins. Mem. Inst. Oswaldo Cruz 104:427-433

28. Eibes, G.M., L·-Chau, T.A., Ruiz-DueÒas, F.J., Feijoo, G., MartÌnez, M.J., MartÌnez, A.T. & Lema, J.M. 2009 Effect of culture temperature on the heterologous expression of Pleurotus eryngii versatile peroxidase in Aspergillus hosts. Bioprocess Biosystems Eng. 32:129-134

29. Ejzykowicz. D.E., Cunha, M.M., Rozental, S., Solis, N.V., Gravelat, F.N., Sheppard, D.C. & Filler, S.G. 2009 The Aspergillus fumigatus transcription factor Ace2 governs pigment production, conidiation and virulence. Mol. Microbiol. 72:155-169

30. El-Ganiny, A.M., Sanders, D.A.R. & Kaminskyj, S.G.W. 2008 Aspergillus nidulans UDP-galactopyranose mutase, encoded by ugmA plays key roles in colony growth, hyphal morphogenesis, and conidiation. Fungal Genet. Biol. 45:1533-1542

31. Elleuche, S. & Pˆggeler, S. 2009 Evolution of carbonic anhydrases in fungi. Curr. Genet. 55:211-222

32. Emri, T., Szil·gyi, M., L·szlÛ, K., M-Hamvas, M. & PÛcsi, I. 2009 PepJ is a new extracellular proteinase of Aspergillus nidulans. Folia Microbiol. 54:105-109

33. EscaÒo, C.S., Juvvadi, P.R., Jin, F.J., Takahashi, T., Koyama, Y., Yamashita, S., Maruyama, J.-i. & Kitamoto, K. 2009 Disruption of the Aopex11-1 gene involved in peroxisome proliferation leads to impaired Woronin body formation in Aspergillus oryzae. Eukaryot. Cell 8:296-305

34. Etxebsete, O., Herrero-Garcia, E., Ara·jo-Baz·n, L., RodrÌguez-Urra, A.B., Garzia, A. & Espeso, E.A. 2009 The bZIP-transcription factor FlbB regulates distinct morphogenetic stages of colony formation in Aspergillus nidulans. Mol. Microbiol. 73:775-789

35. Federova, N.D., Harris, S., Chen, D., Denning, D.W., Yu, J., Cotty, P.J. & Nierman, W.C. 2009 Using aCGH to study intraspecific genetic variability in two pathogenic molds, Aspergillus fumigatus and Aspergillus flavus. Med. Mycol. 47, suppl2:S34-41

36. Fleck, C.B. & Brock, M. 2009 Re-characterisation of Saccharomyces cerevisiae Ach1p: fungal CoA-transferases are involved in acetic acid detoxification. Fungal Genet. Biol. 46:473-485

37. Flipphi, M., Sun, J., Robellet, X., Karaffa, L., Fekete, E., Zeng, A.-P. & Kubicek, C.P. 2009 Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp. Fungal Genet. Biol. 46 suppl.1:S19-S44

38. Florea, S., Andreeva, K., Machado, C., Mirabito, P.M. & Schardl, C.L. 2009 Elimination of marker genes from transformed filamentous fungi by unselected transient transfection with a Cre-expressing plasmid. Fungal Genet. Biol. 46:721-730

39. Frisvad, J.C., Rank, C., Nielsen, K.F. & Larsen, T.O. 2009 Metabolomics of Aspergillus fumigatus. Med. Mycol. 47,suppl1:s53-71

40. Fuchs, B.B. & Mylonakis, E. 2009 Our paths might cross: the role of the fungal cell wall integrity pathway in stress responses and cross talk with other stress response pathways. Eukaryot. Cell 8:1616-1625

41. Fukuda, K., Yamada, K., Deoka, K., Yamashita, S., Ohta, A. & Horiuchi, H. 2009 Class III chitin synthase ChsB of Aspergillus nidulans localizes at the sites of polarized cell wall synthesis and is required for conidial development. Eukaryot. Cell 8:945-956

42. Fuller, K.K., Zhao, W., Askew, D.S. & Rhodes, J.C. 2009 Deletion of the protein kinase A regulatory subunit leads to deregulation of mitochondrial activation and nuclear duplication in Aspergillus fumigatus. Eukaryot. Cell 8:271-277

43. Gaind, S., Nain, L. & Patel, V.B. 2009 Quality evaluation of co-composted wheat straw, poultry droppings and oil seed cakes. Biodegradation 20:307-317

44. Gao, X., Brodhagen, M., Isakeit, T., Brown, S.H., Gˆbel. C., Betran, J., Feussner, I., Keller, N.P. & Kolomiets, M.V. 2009 Inactivation of the lipoxygenase ZmLOX3 increases susceptibility of maize to Aspergillus spp. Mol. Plant-Microbe Interact. 22:222-231

45. Garcia, I., Mathieu, M., Nikolaev, I., Felenbok, B. & Scazzocchio, C. 2008 Roles of the Aspergillus nidulans homologues of Tup1 and Ssn6 in chromatin structure and cell viability. FEMS Microbiol. Lett. 289:146-154

46. Garzia, A., Etxebeste, O., Herrero-Garcia, E., Fischer, R., Espeso, E.A. & Ugalde, U. 2009 Aspergillus nidulans FlbE is an upstream developmental activator of conidiation functionally associated with the putative transcription factor FlbB. Mol. Microbiol. 71:172-184

47. Geiser, D.M. 2009 Sexual structures in Aspergillus:morphology, importance and genomics. Med. Mycol. 47,suppl1:S21-26

48. Georgianna, D.R. & Payne, G.A. 2009 Genetic regulation of aflatoxin biosynthesis: from gene to genome. Fungal Genet. Biol. 46:113-125

49. Geysens, S., Whyteside, G. & Archer, D.B. 2009 Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the aspergilli. Fungal Genet, Biol. 46, Suppl. 1:S121-S140

50. Goto, M., Harada, Y., Oka, T., Matsumoto, S., Takegawa, K. & Furukawa, K. 2009 Protein O-mannosyltransferases B and C support hyphal development and differentiation in Aspergillus nidulans. Eukaryot. Cell. 8:1465-1474

51. Hagiwara, D., Asano, Y., Marui, J., Yoshimi, A., Mizuno, T. & Abe, K. 2009 Transcriptional profiling for Aspergillus nidulans HogA MAPK signaling pathway in response to fludioxonil and osmotic stress. Fungal Genet. Biol. 46:868-878

52. Hagiwara, D., Asano, Y., Yamashino, T. & Mizuno, T. 2008 Characterization of bZip-type transcription factor AtfA with reference to stress responses of conidia of Aspergillus nidulans. Biosci. Biotechnol. Biochem. 72:2756-2760

53. Hagiwara, D., Mizuno, T. & Abe, K. 2009 Characterization of NikA histidine kinase and two response regulators with special reference to osmotic adaptation and asexual development in Aspergillus nidulans. Biosci. Biotechnol. Biochem. 73:1566-1571

54. Hagiwara, D., Kondo, A., Fujioka, T. & Abe, K. 2008 Functional analysis of C2H2 zinc finger transcription factor CrzA involved in calcium signaling in Aspergillus nidulans. Current Genetics 54:325-338

55. Hamari, Z., Amillis, S., Drevet, C., Apostolaki, A., V·gvˆlgyi, C., Diallinas, G. & Scazzocchio, C. 2009 Convergent evolution and orphan genes in the Fur4p-like family and characterization of a general nucleoside transporter in Aspergillus nidulans. Mol. Microbiol. 73:43-57

56. Harris, S.D., 2009 The spitzenkˆrper: a signalling hub for the control of fungal develoment? Mol. Microbiol. 73:733-736

57. Harris, S.D., Turner, G., Meyer, V., Espeso, E.A., Specht, T., Takeshita, N. & Helmstedt, K. 2009 Morphology and development in Aspergillus nidulans: a complex puzzle. Fungal Genet. Biol. 46, Suppl. 1:S82-S92

58. Hickey, P.C. & Read, N.D. 2009 Imaging living cells of Aspergillus in vitro. Med. Mycol. 47 Suppl 1:S110-119

59. Higashitsuji, Y., Herrero, S., Takeshita, N. & Fischer, R. 2009 The cell end marker protein TeaC is involved in growth directionality and septation in Aspergillus nidulans. Eukaryot. Cell 8:957-967

60. Higuchi, Y., Shoji. J.-y., Arioka, M. & Kitamoto, K. 2009 Endocytosis is crucial for cell polarity and apical membrane recycling in the filamentous fungus Aspergillus oryzae. Eukaryot. Cell 8:37-46

61. Hisada, H., Sano, M., Hata, Y., Abe, Y. & Machida, M. 2008 Deletion analysis of the catalase-encoding gene (catB) promoter form Aspergillus oryzae. Biosci. Biotechnol. Biochem. 72:48-53

62. Hof, H., Dietz, A. 2009 Antifungal activity of anidulafungin, a product of Aspergillus nidulans, against Aspergillus nidulans. Int. J. Antimicrob. Agents 33:285-286

63. Hofmann, G., Diano, A. & Nielsen, J. 2009 Recombinant bacterial hemoglobin alters metabolism of Aspergillus niger. Metabol. Eng. 11:8-12

64. Horiuchi, H. 2009 Functional diversity of chitin synthases of Aspergillus nidulans in hyphal growth, conidiophore development and septum formation. Med. Mycol. 47, suppl1:S47-52

65. Horn, B.W., Ramirez-Prado, J.H. & Carbone, I. 2009 Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus. Fungal Genet. Biol. 46:169-175

66. Jacobs, D.I., Olsthoorn, M.M.A., Maillet, I., Akeroyd, M., Breestraat, S., Donkers, S., van der Hoeven, R.A.M., van den Hondel, C.A.M.J.J., Kooistra, R., Lapointe, T., Menke, H., Meulenberg, R., Misset, M., M¸ller, W.H., van Peij, N.N.M.E., Ram, A., Rodriguez, S., Roelofs, M.S., Roubos, J.A., van Tilborg, M.W.E.M., Verkleij, A.J., Pel, H.J., Stam, H. & Sagt, C.M.J. 2009 Effective lead selection for improved protein production in Aspergillus niger based on integrated genomics. Fungal Genet. Biol. 46 suppl.1: S141-S152

67. Jonkers, W. & Rep, M. 2009 Lessons from fungal F-box proteins. Eukaryot. Cell 8:677-695

68. Katz, M.E., Evans, C.J., Heagney, E.E., vanKuyk, P.A., Kelly, J.M. & Cheetham, B.F. 2009 Mutations in genes encoding sorting nexins alter production of intracellular and extracellular proteases in Aspergillus nidulans. Genetics 181:1239-1247

69. Kelly, D.E., Krasevec, N., Mullins, J. & Nelson, D.R. 2009 The CYPome (Cytochrome P450 complement) of Aspergillus nidulans. Fungal Genet. Biol. 46, Suppl.1:S53-S61

70. Kiel, J.A.K.W. & van der Klei, I.J. 2009 Proteins involved in microbody biogenesis and degradation in Aspergillus nidulans. Fungal Genet. Biol. 46, Suppl.1:S62-S71

71. Kim, H.R., Chae, K.-S., Han, K.-H. & Han, D.-M. 2009 The nsdC gene encoding a putative C2H2-type transcription factor is a key activator of sexual development in Aspergillus nidulans. Genetics 182:771-783

72. Kim, H.-Y., Han, K.-H., Lee, M., Oh, M., Kim, H.-S., Zhixiong, X., Han, D.-M., Jahng, K.-Y., Kim, J.H. & Chae, K.-S. 2009 The veA gene is necessary for the negative regulation of the veA expression in Aspergillus nidulans. Curr. Genet. 55:391-397

73. Kim, J.-M., Zeng, C.J.T., Nayak, T., Shao, R., Huang, A.-C., Oakley, B.R. & Liu, B. 2009 Timely septation requires SNAD-dependent spindle pole body localization of the septation initiation network components in the filamentous fungus Aspergillus nidulans. Mol. Biol. Cell. 20:2874-2884

74. Kimura, S., Maruyama, J.-i., Takeuchi, M. & Kitamoto, K. 2008 Monitoring global gene expression of proteases and improvement of human lysozyme production in the nptB gene disruption of Aspergillus oryzae. Biosci. Biotechnol. Biochem. 72:499-505

75. Klaassen, C.H.W. 2009 MLST versus microsatellites for typing Aspergillus fumigatus isolates. Med. Mycol. 47,suppl.1:S27-S33.

76. Kriankripipat, T. & Momany, M. 2009 Aspergillus nidulans protein O-mannosyltransferases play roles in cell wall integrity and developmental patterning. Eukaryot. Cell 8:1475-1485

77. Krishnan, S., Manavathu, E.K. & Chandrasekar, P.H. 2009 Aspergillus flavus: an emerging non-fumigatus Aspergillus species of significance. Mycoses 53:206-222

78. Kwon, B.-R., Kim, M.-J., Park, J.-A., Chung, H.-J., Kim, J.-M., Park, S.-M., Yun, S.-H., Yang, M.-S. & Kim, D.-H. 2009 Assessment of the core cryparin promoter from Cryphonectria parasitica for heterologous expression in filamentous fungi. Appl. Microbiol. Biotechnol. 83:339-348

79. Lee, I., Oh, J.-H., Schwab, E.K., Dagenais, T.T.T., Andes, D. & Keller, N.P. 2009 HdaA, a class 2 histone deacetylase of Aspergillus fumigatus, affects germination and secondary metabolite production. Fungal Genet. Biol. 46:782-790

80. Li, Y., Fang, W., Zhang, L., Ouyang, H., Zhou, H., Luo, Y. & Jin, C. 2009 Class IIC a-mannosidase AfAms1 is required for morphogenesis and cellular function in Aspergillus fumigatus. Glycobiol. 19:624-632

81. Liang, Y., Pan, L. & Lin, Y. 2009 Analysis of extracellular proteins of Aspergillus oryzae grown on soy sauce koji. Biosci. Biotechnol. Biochem. 73:192-195

82. Liu, H.-L., De Souza, C.P.C., Osmani, A.H. & Osmani, S.A. 2009 The three fungal transmembrane nuclear pore complex proteins of Aspergillus nidulans are dispensable in the presence of an intact An-Nup84-120 complex. Mol. Biol. Cell. 20:616-630

83. Lubertozzi, D. & Keasling, J.D. 2008 Expression of a synthetic Artemesia annua amorphadiene synthase in Aspergillus nidulans yields altered product distribution. J. Indust. Microbiol. Biotechnol. 35:1191-1198

84. Mabey Gilsenen, J.E., Atherton, G., Bartholomew, J., Giles, P.F., Attwood, T.K., Denning, D.W. & Bowyer, P. 2009 Aspergillus genomes and the Aspergillus cloud. Nucleic Acids. Res. 37:D509-D519

85. Maheswari, S. & Murugesan, A.G., 2009 Remediation of arsenic in soil by Aspergillus nidulans isolated from an arsenic-contaminated site. Env. Technol. 30:921-926

86. Maiya, S., Grundmann, A., Li, S,-M. & Turner, G. 2009 Improved tryprostatin B production by heterologous gene expression in Aspergillus nidulans. Fungal Genet. Biol. 46:436-440

87. Makita, T., Katsuyama, Y., Tani, S., Suzuki, H., Kato, N., Todd, R.B., Hynes, M.J., Tsukagoshi, N., Kato, M. & Kobayashi, T. 2009 Inducer-dependent nuclear localization of a Zn(II)(2)Cys(6) transcriptional activator, AmyR, in Aspergillus nidulans. Biosci. Biotechnol. Biochem. 73:391-399

88. Malavazi, I., Da Silva Ferreira, M.E., Soriani, F.M., Dinamarco, T.M., Savoldi, M., Uyemura, S.A., de Souza Goldman, M.H. & Goldman, G.H. 2009 Phenotypic analysis of genes whose mRNA accumulation is dependent on calcuneurin in Aspergillus fumigatus. Fungal Genet. Biol. 46:791-802

89. Malaviya, A. & Gomes, J. 2009 Rapid screening and isolation of a fungus for sitosterol to androstenedione biotransformation. Appl. Biochem. Biotechnol. 158:374-386

90. Martens-Uzunova, E.S. & Schaap, P.J. 2009 Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics. Fungal Genet. Biol. 46 suppl.1:S170-S179

91. Masuda, S., Kikuchi, K., Matsumoto, Y., Sugimoto, T., Shoji, H. & Tanabe, M. 2009 Analysis of enzyme production by submerged culture of Aspergillus oryzae using whole barley. Biosci. Biotechnol. Biochem. 73:2190-2195

92. Matsushita, M., Tada, S., Suzuki, S., Kusumoto, K.-i. & Kashiwagi, Y. 2009 Deletion analysis of the promoter of Aspergillus oryzae gene encoding heat shock protein 30. J. Biosci. .Bioeng. 107:345-351

93. Meijer, S., de Jongh, W.A., Olsson, L. & Nielsen, J. 2009 Physiological characterisation of acuB deletion in Aspergillus niger. Appl. Microbiol. Biotechnol. 84:157-167

94. Miskei, M., Kar·nyi, Z. & PÛcsi, I. 2009 Annotation of stress-response proteins in the aspergilli. Fungal Genet. Biol. 46, Suppl. 1:S105-S120

95. Miyake, Y., Ito, C., Itoigawa, M. & Osawa T. 2009 Antioxidants produced by Eurotium and Aspergillus fungi used in the manufacture of karebushi, dried bonito (katsuobushi). Biosci. Biotechnol. Biochem. 73:1323-1327

96. Mizutani, O., Furukawa, K., Ichiyanagi, S., Matsuda, Y., Tokuoka, M., Fujioka, T., Yamagata, Y., Gomi, K. & Abe, K. 2009 Alternative processing of proproteins in Aspergilli kexB gene disruptants under hyperosmotic conditions. Biosci. Biotechnol. Biochem. 73:40-46

97. Moss, B.J., Kim, Y., Nandakumar, M.P. & Marten, M.R. 2008 Quantifying metabolic activity of filamentous fungi using a colorimetric XTT assay. Biotechnol. Prog. 24:780-783

98. Mota, A.O.Jr., Malavasi, I., Soriani, F.M., Heinekamp, T., Jacobsen, I., Brakhage, A.A., Savoldi, M., Goldman, M.H.S., da Silva Ferreira, M.E. & Goldman, G.H. 2008 Molecular characterization of the Aspergillus fumigatus NCS-1 homologue, NcsA. Mol. Gen. Genomics 289:483-495

99. O’Gorman, C.M., Fuller, H.T. & Dyer, P.S. 2009 Discovery of a sexual cycle in the opportunistic fungal pathogen Aspergillus fumigatus. Nature 472:471-474

100. Oestreicher, N. & Scazzocchio, C. 2009 Phenotypes of mutations in the 5'-UTR of a limiting transcription factor in Aspergillus nidulans can be accounted for by translational inhibition and leaky scanning. Genetics 181:1261-1272

101. Ogasawara, H., Obata, H., Hata, Y., Takahashi, S. & Gomi, K. 2009 Crawler, a novel Tc1/Mariner-type transposable element in Aspergillus oryzae transposes under stress conditions. Fungal Genet. Biol. 46:441-449

102. Palmer, J.M., Perrin, R.M., Dagenais, T.R.T. & Keller, N.P. 2008 H3K9 methylation regulates growth and development in Aspergillus fumigatus. Eukaryot. Cell 7:2052-2060

103. Panagiotou, G., Anderson, M.R., Grotkjaer, T., Regueira, T.B., Nielsen, J. & Olsson, L. 2009 Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools. Appl. Env. Microbiol. 75:2212-2220

104. Panagiotou, G., Grotkjaer, T., Hofmann, G., Bapat, P.M. & Olsson, L. 2009 Overexpression of a novel endogenous NADH kinase in Aspergillus nidulans enhances growth. Metabol. Eng. 11:31-39

105. Pandey, A.K., Gaind, S., Ali, A. & Nain, L. 2009 Effect of bioaugmentation and nitrogen supplementation on composting of paddy straw. Biodegradation 20:293-306

106. Pilsyk, S. & Paszewski, A. 2009 The Aspergillus nidulans pigP gene encodes a subunit of GPI-N-acetylglucosaminyltransferase which influences filamentation and protein secretion. Curr. Genet. 55:301-309

107. Pinchai, N., Perfect, B.Z., Juvvadi, P.R., Fortwendel, J.R., Cramer, R.A.Jr., Asfaw, Y.G., Heitman, J., Perfect, J.R. & Steinbeck, W. 2009 Aspergillus fumigatus calcipressin CpbA is involved in hyphal growth and calcium homeostasis. Eukaryot. Cell 8:511-519

108. Pollack, J.K., Harris, S.D. & Marten, M.R. 2009 Autophagy in filamentous fungi. Fungal. Genet. Biol. 46:1-8

109. Punt, P.J., Schuren, F.H.J., Lehmbeck, J., Christensen, T., Hjort, C. & van den Hondel, C.A.M.J.J. 2008 Characterization of the Aspergillus niger prtT, a unique regulator of extracellular protease encoding genes. Fungal Genet. Biol. 45:1591-1599

110. Purschwitz, J., M¸ller, S. & Fischer, R. 2009 Mapping the interaction sites of Aspergillus nidulans phytochrome FphA with the global regulator VeA and the White Collar protein LreB. Mol. Genet. Genomics 281:35-42

111. Ramirez, M., Castro, C., Palomares, J.C., Torres, M.J., Aller, A.I., Ruiz, M., Aznar, J. & MartÌn-Mazuelos, E. 2009 Molecular detection and identification of Aspergillus spp. from clinical samples using real-time PCR. Mycoses 52:129-134

112. Qiao, J., Lin, L. & Tianhong, W. 2008 [Not seen: in Chinese] “Progress in research on apoptosis in filamentous fungi” Wei Sheng Wu Hsueh Pao - Acta Microbiologica Sinica 48:551-555

113. Richie, D.L. & Askew, D.S. 2008 Autophagy in the filamentous fungus Aspergillus fumigatus. Methods Enzymol. (Ch. 12) 451:241-250

114. Rispail, N., Soanes, D.M., Ant, S., Czajkowski, R., Gr¸nier, A., Huguet, R., Perez-Nadales, E., Poli, A., Sartorel, E., Valiante, V., Yang, M., Beffa, R., Brakhage, A.A., Gow, N.A.R., Kahmann, R., Lebrun, M.-H., Lenasi, H., Perez-Martin, J., Talbot, N.J., Wendland, J. & Di Pietro, A. 2009 Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. Fungal Genet. Biol. 46:387-298

115. Rodriguez-Gal·n, O., Galindo, A., Herv·s-Aguilar, A., Arst, H.N.Jr. & Penalva, M.A. 2009 Physiological involvement in pH signaling of Vps24-mediated recruitment of Aspergillus PalB cysteine protease to ESCRT-III. J. Biol. Chem. 284:4404-4412

116. Saikia, S. & Scott, B. 2009 Functional analysis and subcellular localization of two geranylgeranyl diphosphate synthases from Penicillium paxilli. Mol. Genet. Genomics 282:257-271

117. Sakai, K., Kinoshita, H., Shimizu, T., Nihira, T. 2008 Construction of a citrinin gene cluster expression system in heterologous Aspergillus oryzae. J. Biosci. Bioeng. 106:466-472

118. Sakamoto. K., Iwashita, K., Yamada, O., Kobayashi, K., Mizuno, A., Akita, O., Mikami, S., Shimoi, H. & Gomi, K. 2009 Aspergillus oyzae atfA controls conidial germination and stress tolerance. Fungal Genet. Biol. 46:887-897

119. Samson, R.A. & Varga, J. 2009 What is a species in Aspergillus? Med. Mycol. 47, suppl1:S31-20

120. Sato, I., Shimizu, M., Hoshino, T. & Takaya, N. 2009 The glutathione system of Aspergillus nidulans involves a fungus-specific glutathione S-transferase. J. Biol. Chem. 284:8042-8053

121. Schroeckh, V., Scherlach, K., N¸tzmann, H.-W., Shelest, E., Schmidt-Heck, W., Schuemann, J., Martin, K., Hertweck, C. & Brakhage, A.A. 2009 Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans. Proc. Nat. Acad. Sci. USA 106:14558-14563

122. Shi, J., Chen, W., Liu, Q., Chen, S., Hu, H., Turner, G. & Lu, L. 2008 Depletion of the MobB and CotA complex in Aspergillus nidulans causes defects in polarity maintenance that can be suppressed by the environment stress. Fungal Genet. Biol. 45:1570-1581

123. Shima, Y., Shiima, M., Shinozawa, T., Ito, Y., Nakajima, H., Adachi, Y. & Yabe, K. 2009 Participation in aflatoxin biosynthesis by a reductase enzyme encoded by vrdA gene outside the aflatoxin cluster. Fungal Genet. Biol. 46:221-231

124. Shin, K.-S., Kwon, N.-J., Kim, Y.H., Park, H.-S., Kwon, G.-S. & Yu, J.-H. 2009 Differential roles of the ChiB chitinase in autolysis and cell death of Aspergillus nidulans. Eukaryot. Cell 8:738-746

125. Sienko, M., Natorff, R., Owczarek, S., Olewiecki, I. & Paszewski, A. 2009 Aspergillus nidulans genes encoding reverse transsulfuration enzymes belong to homocysteine regulon. Curr. Genet. 55:561-570

126. Skamnioti, P., Furlong, R.F. & Gurr, S.J. 2008 Evolutionary history of the ancient cutinase family in five filamentous Ascomycetes reveals differential gene duplications and losses and in Magnaporthe grisea shows evidence of sub- and neo-functionalization. New Phytol. 180:711-721

127. Snelders, E., Huis in ‘t Veld, R.A.G., Rijs, A.J.M.M., Kema, G.H.J., Melchers, W.J.G. & Verweij, P.E. 2009 Possible environmental origin of resistance of Aspergillus fumigatus to medical triazoles. Appl. Env. Microbiol. 75:4053-4057

128. Son, S. & Osmani, S.A. 2009 Analysis of all protein phosphatase genes in Aspergillus nidulans identifies a new mitotic regulator, fcp1. Eukaryot. Cell 8:573-585

129. Soriani, F.M., Kress, M.R., Fagundes de GouvÍa, P., Malavazi, I., Savoldi, M., Gallmetzer, A., Strauss, J., Goldman, M.H.S. & Goldman, G.H. 2009 Functional characterization of the Aspergillus nidulans methionine sulfoxide reductases (msrA and msrB). Fungal Genet. Biol. 46:410-417

130. Sousa, G.D., Zucchi, T.D., Zucchi, F.D., Miller, R.G., Anjos, R.M.A., Poli, P. & Zucchi, T.M.A.D. 2009 Aspergillus nidulans as a biological system to detect the genotoxic effects of mercury fumes on eukaryotes. Gen. Mol. Res. 8:404-413

131. Sprˆte, P., Brakhage, A.A. & Hynes, M.J. 2009 Contribution of peroxisomes to penicillin biosynthesis in Aspergillus nidulans. Eukaryot. Cell 8:421-423

132. Steffan, N., Grundmann, A., Yin, W.-B., Kremer, A. & Li, S.-M. 2009 Indole prenyltransferases from fungi: a new enzyme group with high potential for the production of prenylated indole derivatives. Curr. Med. Chem. 16:218-231

133. Stevens, D.A. 2009 Clinical aspergillosis for basic scientists. Med. Mycol. 47,suppl1:S1-4

134. Szewczyk, E., Chiang, Y.-M., Oakley, C.E., Davidson, A.D., Wang, C.C. & Oakley, B.R. 2008 Identification and characterization of the asperthecin gene cluster of Aspergillus nidulans. Appl. Env. Microbiol. 74:7607-7612

135. Takehashi, T., Jin, F.J. & Koyama, Y. 2009 Nonhomologous end-joining deficiency allows large chromosomal deletions to be produced by replacement-type recombination in Aspergillus oryzae. Fungal Genet. Biol. 436:815-824

136. Takehashi, T., Jin, F.J., Sunegawa, M., Machida, M. & Koyama, Y. 2009 Generation of large chromosomal deletions in koji molds Aspergillus oryzae and Aspergillus sojae via a loop-out recombination. Appl. Env. Microbiol. 74:7684-7693

137. Takeshita, N., Higashitsuji, Y., Konzack, S. & Fischer, R. 2008 Apical sterol-rich membranes are essential for localizing cell end markers that determine growth directionality in the filamentous fungus Aspergillus nidulans. Mol. Biol. Cell. 19:339-351

138. Tokuoka, M., Seshime, Y., Fujii, I., Kitamoto, K., Takahashi, T. & Koyama, Y. 2008 Identification of a novel polyketide synthase-nonribosomal peptide synthetase (PKS-NRPS) gene required for the biosynthesis of cyclopiazonic acid in Aspergillus oryzae. Fungal Genet. Biol. 45:1608-16115

139. Takaya, N. 2009 Response to hypoxia, reduction of electron acceptors, and subsequent survival by filamentous fungi. Biosci. Biotechnol. Biochem. 73:1-8

140. Thykaer, J., Rueksomtawin, K., Noorman, H. & Nielsen, J. 2009 Disruption of the NADPH-dependent glutamate dehydrogenase affects the morphology of two industrial strains of Penicillium chrysogenum. J. Biotechnol. 139:280-282

141. Tsang, A., Butler, G., Powlowski, J., Panisko, E.A. & Baker, S.E. 2009 Analytical and computational approaches to define the Aspergillus niger secretome. Fungal Genet. Biol. 46 suppl.1: S153-S160

142. Tsuizaki. M., Takeshita, N., Ohta, A. & Horiuchi, H. 2009 Myosin motor-like domain of the class VI chitin synthase CsmB is essential to its functions in Aspergillus nidulans. Biosci. Biotechnol. Biochem. 73:1163-1167

143. Twumasi-Boateng, K., Yu, Y., Chen, D., Gravelat, F.N., Nierman, W.C. & Sheppard, D.C. 2009 Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus. Eukaryot. Cell 8:104-115

144. Ukil, L., De Souza, C.P., Liu, H.-L. & Osmani, S.A. 2009 Nucleolar separation from chromosomes during Aspergillus nidulans mitosis can occur without spindle forces. Mol. Biol. Cell. 20:2132-2145

145. Ukil, L., Varadaraj, A., Govindaraghavan, M., Liu, H.-L. & Osmani, S.A. 2008 Copy number suppressors of the Aspergillus nidulans nimA1 mitotic kinase display distinctive and highly dynamic cell cycle-regulated locations. Eukaryot. Cell 7:2087-2099

146. Valiente, V., Jain, R., Heinekamp, T. & Brakhage, A.A. 2009 The MpkA MAP kinase module regulates cell wall integrity signaling and pyomelanin formation in Aspergillus fumigatus. Fungal Genet. Biol. 46:909-918

147. Visser, J., Eurofung 2009 Thematic issue: aspergillus genomics and beyond. Preface. Fungal Genet. Biol. 46, Suppl. 1:S1.

148. von Dohren, H. 2009 A survey of nonribosomal peptide synthetase (NRPS) genes in Aspergillus nidulans. Fungal Genet. Biol. 46, Suppl.1:S45-52

149. Wadman, M.W., de Vries, R.P., Kalkhove, S.I., Veldink, G.A. & Vliegenthart, J.F.G. 2009 Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger. BMC Microbiol. 9:59.

150. Wallner, A., Blatzer, M., Schrettl, M., Sarg, B., Lindner, H. & Haas, H. 2009 Ferricrocin, a siderophore involved in intra- and transcellular iron distribution in Aspergillus fumigatus. Appl. Env. Microbiol. 75:4194-4196

151. Wang, C.C.C., Chiang, Y.-M., Kuo, P.-L., Chang, J.-K. & Hsu, Y.-L. 2008 Norsolorinic acid inhibits proliferation of T24 human bladder cancer cells by arresting the cell cycle at the G0/G1 phase and inducing a Fas/membrane-bound Fas ligand-mediated apoptotic pathway. Clin. Exp. Pharmacol. Physiol. 35:1301-1308

152. Wang, H., Xu, Z., Gao, L. & Hao, B. 2009 A fungal phylogeny based on 82 complete genomes using the composition vector method. BMC Evol. Biol. 9:195.

153. Wang, J., Hu, H., Wang, S., Shi, J., Chen, S., Wei, H., Xu, X. & Lu, L. 2009 The important role of actinin-like protein (AcnA) in cytokinesis and apical dominance of hyphal cells in Aspergillus nidulans. Microbiol. 155:2714-2725

154. Wang, K., Ussery, D.W. & Brunak, S. 2009 Analysis and prediction of gene splice sites in four Aspergillus genomes. Fungal Genet. Biol. 46 Suppl.1:S14-18

155. Weber, W., Luzi, S., Karlsson, M. & Fussenegger, M. 2009 A novel hybrid dual-channel catalytic-biological sensor system for assessment of fruit quality. J. Biotechnol. 139:314-317

156. Willger, S.D., Grahl, N. & Cramer, R.A.Jr. 2009 Aspergillus fumigatus metabolism: clues to mechanisms of in vivo fungal growth and virulence. Med. Mycol. 47 suppl1:s72-79

157. Willger, S.D., Puttikamonkul, S., Kim, K.-H., Burritt, J.B., Grahl, N., Metzler, L.J., Barbuch, R., Bard, M., Lawrence, C.B. & Cramer, R.A.Jr. 2009 A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus. PLoS Pathogens 4:e1000200

158. Wortman, J.R., Mabey Gilsenan, J., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M.R., Archer, D., Bencina, M., Braus, G., Coutinho, P., von Dˆhren, H., Doonan, J., Driessen, A.J.M., Durek, P., Espeso, E., Fekete, E., Flipphi, M., Estrada, C.G., Geysens, S., Goldman, G., de Groot, P.W.J., Hansen, K., Harris, S.D., Heinekamp, T., Helmstaedt, K., Henrissat, B., Hofmann, G., Homan, T., Horio, T., Horiuchi, H., James, S., Jones, M., Karaffa, L., Kar·nyi, Z., Kato, M., Keller, N., Kelly, D.E., Kiel, J.A.K.W., Kim, J.-M., van der Klei, I.J., Klis, F.M., Kovalchuk, A., Krasevec, N., Kubicek, C.P., Liu, B., MacCabe, A., Meyer, V., Mirabito, P., Miskei, M., Mos, M., Mullins, J., Nelson, D.R., Nielsen, J., Oakley, B.R., Osmani, S.A., Pakula, T., Paszewski, A., Paulsen, I., Pilsyk, S., PÛcsi, I., Punt, P.J., Ram, A.J.F., Ren, Q., Robellet, X., Robson, G., Seiboth, B., van Solingen, P., Specht, T., Sun, J., Taheri-Talesh, N., Takeshita, N., Ussery, D., VanKuyk, P.A., Visser, H., van de Vondervoort, P.J.I., de Vries, R.P., Walton, J., Xiang, X., Xiong, Y., Zeng, A.P., Brandt, B.W., Cornell, M.J., van den Hondel, C.A.M.J.J., Visser, J., Oliver, S.G. & Turner, G. 2009 The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet. Biol 46, Suppl.1:S3-S13

159. Yasmin, S., Abt, B., Schrettl, M., Moussa, T.A.A., Werner, E.R. & Haas, H. 2009 The interplay between iron and zinc metabolism in Aspergillus fumigatus. Fungal Genet. Biol. 46:707-713

160. Ye, L. & Pan, L. 2008 Comparison of the unfolded protein response in solid-state with submerged cultures of Aspergillus oryzae. Biosci. Biotechnol. Biochem. 72:2998-3001

161. Zekert. N. & Fischer, R. 2009 The Aspergillus nidulans kinesin-3 UncA motor moves vesicles along a subpopulation of microtubules. Mol. Biol. Cell. 20:673-684

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