Aspergillus Bibliography 2008


This bibliography attempts to cover genetical and biochemical publications on Aspergillus nidulans and also includes selected references to related species and topics.  Entries have been checked as far as possible, but please tell me of any errors and omissions.  Authors are kindly requested to send a copy of each article to the FGSC for its reprint collection.


John Clutterbuck. Faculty of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK.  Email:



1. Abe, K. & Gomi, K. 2008 Food products fermented by Aspergillus oryzae. Ch 25 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 429-439

2. Abu Seadah, A.A. & El Shikh, M.E. 2008 RAPD typing of Aspergillus chevalieri, Aspergillus nidulans, Aspergillus tetrazonus (quadrilineatus) and their teleomorphs using 5'-d[AACGCGCAAC]-3' and 5'-d[CCCGTCAGCA]-3' primers. Mol. Biol. Repts. 35:89-95

3. Ahuja, M. & Punekar, N.S. 2008 Phosphinothricin resistance in Aspergillus niger and its utility as a selectable transformation marker. Fung. Genet. Biol. 45:1103-1110

4. Amillis, S., Hamari, Z., Roumelioti, K., Scazzocchio, C. & Diallinas, G. 2007 Regulation of expression and kinetic modeling of substrate interactions of a uracil transporter in Aspergillus nidulans. Mol. Memb. Biol. 24:206-214

5. Andersen, M.R., Vongsangnak, W., Panagiotou, G., Salazar, M.P., Lehmann, L. & Nielsen, J. 2008 A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species. Proc. Natl. Acad. Sci, USA. 105:4387-4392

6. Araújo-Bazán, L., Fernández-Martínez, J., Ríos, V.M., Etxebeste, O., Albar, J.P., Peńalva, M.A. & Espeso, E.A. 2008 NapA and NapB are the Aspergillus nidulans Nap/SET family members and NapB is a nuclear protein specifically interacting with importin α. Fungal Genet. Biol. 45:278-291

7. Araújo-Bazán, L., Peńalva, M.A. & Espeso, E.A. 2008 Preferential localization of the endocytic internalization machinery to hyphal tips underlies polarization of the actin cytoskeleton in Aspergillus nidulans. Mol. Microbiol. 67:891-905

8. Atoui, A., Bao, D., Kaur, N., Grayburn, W.S. & Calvo, A.M. 2008 Aspergillus nidulans natural product biosynthesis is regulated by MpkB, a putative pheromone response mitogen-activated protein kinase. Appl. Env. Microbiol. 74:3596-3600

9. Baker, S.E. & Bennett, J.W. 2008 An overview of the genus Aspergillus. Ch 1 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 3-13

10. Balibar, C.J., Howard-Jones, A.R. & Walsh, C.T. 2007 Terrequinone A biosynthesis through L-tryptophan oxidation, dimerization and bisprenylation. Nature Chem. Biol. 3:584-592

11. Barton, L.M. & Prade, R.A. 2008 Inducible RNA interference of brlAb in Aspergillus nidulans. Euk. Cell 7:2004-2007

12. Bayram, O., Biesemann, C., Krappmann, S., Galland, P. & Braus, G.H. 2008 More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development. Mol. Biol. Cell 19:3254-3262

13. Bayram, O., Krappmann, S., Ni, M., Bok, J.W., Helmstaedt, K., Valerius, O., Braus-Stromeyer, S., Kwon, N.-J., Keller, N.P., Yu, J.-H. & Braus, G.H. 2008 VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism. 2008 Science 320: 1504-1506

14. Bayram, O., Krappmann, S., Seiler, S., Vogt, N. & Braus, G.H. 2008 Neurospora crassa ve-1 affects asexual conidiation. Fungal Genet. & Biol. 45:127-138

15. Belaish, R., Sharon, H., Levdansky, E., Greenstein, S., Shadkchan, Y. & Osherov, N. 2008 The Aspergillus nidulans cetA and calA genes are involved in conidial germination and cell wall morphogenesis. Fungal Genet. Biol. 45:232-242

16. Benoit, I., Asther, M., Bourne, Y., Navarro, D., Canaan, S., Lesage-Meesen, L., Herweijer, M., Coutinho, P.M., Asther, M. & Record, E. 2008 Gene overexpression and biochemical characterization of the biotechnologically relevant chlorogenic acid hydrolase from Aspergillus niger. Appl. Env. Microbiol. 74:5624-5632

17. Berger, H., Basheer, A., Böck, S., Reyes-Domingues, Y., Dalik, T., Altmann, F. & Strauss, J. 2008 Dissecting individual steps of nitrogen transcription factor cooperation in the Aspergillus nidulans nitrate cluster. Mol. Microbiol. 69:1385-1398

18. Bhabhra, R., Richie, D.L., Kim, H.S., Nierman, W.C., Fortwendel, J., Aris, J.P., Rhodes, J.C. & Askew, D.S. 2008 Impaired ribosome biogenesis disrupts integration between morphogenesis and nuclear duplication during germination of Aspergillus fumigatus. Eukaryot. Cell 7:575-583

19. Bogdanov, Iu.F. 2008 (In Russian – not read): [Evolution of meiosis of unicellulate and multicellular eucaryotes. Aromorphosis at the cellular level]. Zhurnal Obshchei Biologii.  69:102-117

20. Bouzarelou, D., Billini, M., Roumelioti, K. & Sophianopoulou, V. 2008 EglD, a putative endoglucanase, with an expansin like domain is localized in the conidial cell wall of Aspergillus nidulans. Fung. Genet. Biol. 45:839-850

21. Braaksma, M. & Punt, P.J. 2008 Aspergillus as a cell factory for protein production: controlling protease activity in fungal production. Ch 1 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 3-13

22. Braumann, I., van den Berg, M. & Kempken, F. 2008 Repeat induced point mutation in two asexual fungi, Aspergillus niger and Penicillium chrysogenum. Curr. Genet. 53:287-297

23. Braumann, I., van den Berg, M. & Kempken, F. 2008 Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain. Mol. Genet. Genom. 240:319-325

24. Breakspear, A., Langford, K.J., Momany, M. & Assinder, S.J. 2007 CopA:GFP localizes to putative Golgi equivalents in Aspergillus nidulans. FEMS Microbiol. Lett. 277:90-97

25. Breakspear, A. & Momany, M. 2007 The first fifty microarray studies in filamentous fungi. Microbiol. 153:7-15

26. Breakspear, A. & Momany, M. 2008 Microarrays in Aspergillus species. Ch 28 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 475-481

27. Brock, M., Jouvion, G., Droin-Bergčre, S., Dussurget, O., Nicola, M.-A. & Ibrihaim-Granet, O. 2008 Appl. Env. Microbiol. 74:7023-7035

28. Brodhagen, M., Tsitsigiannis, D.I., Hornung, E., Goebel, C., Feussner, I. & Keller, N.P. 2008 Reciprocal oxylipin-mediated cross-talk in the Aspergillus-seed pathosystem. Molecular Microbiol. 67:378-391.

29. Brown, S.H., Zarnowski, R., Sharpee, W.C. & Keller, N.P. 2008 Morphological transitions governed by density dependence and lipoxygenase activity in Aspergillus flavus. Appl. Env. Microbiol. 74:5674-5685

30. Caddick, M.X. & Dobson, C. 2008 Gene regulation. Ch 8 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 103-119

31. Cai, J., Zeng, H., Shima, Y., Hatabayashi, H., Nakagawa, H., Ito, Y., Adachi, Y., Nakajima, H. & Yabe, K. 2008 Involvement of the nadA gene in formation of G-group aflatoxins in Aspergillus parasiticus. Fung. Genet. Biol. 45:1081-1093

32. Calcagno-Pizarelli, A.M., Negrete-Urtasun, S., Denison, S.H., Rudnicka, J.D., Bussink, H.-J., Múnero-Huertas, T., Stanton, L., Hervás-Aguilar, A., Espeso, E.A., Tilburn, J., Arst, H.N.Jr. & Peńalva, M.A. 2007 Establishment of the ambient pH signaling complex in Aspergillus nidulans: PalI assists plasma membrane localization of palH. Eukaryot. Cell 6:2365-2375

33. Calvo, A.M. 2008 The VeA regulatory system and its role in morphological and chemical development in fungi. Fung. Genet. Biol. 45:1053-1061

34. Cardoso, P.G., Ribeiro, J.B., Teixeira, J.A., de Queiroz, M.V. & de Araújo, E.F. 2008 Overexpression of the plg1 gene encoding pectin lyase in Penicillium griseoroseum. J. Indust. Microbiol. Biotechnol. 35:159-166

35. Casadevall, A. & Pirofski, L.-a. 2007 Accidental virulence, cryptic pathogenesis, martians, lost hosts, and the pathogenicity of environmental microbes. Eukaryot. Cell 6:2169-2174

36. Challis, G.L. 2008 Mining microbial genomes for new natural products and biosynthetic pathways. Microbiol. 154:1555-1569

37. Chamilos, G. & Kontoyiannis, D.  2008 Emerging role of mini-hosts models in the study of aspergillosis. Ch 24 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 413-426

38. Chiang, Y.-M., Szewczyk, E., Nayak, T., Davidson, A.D., Sanchez, J.F., Lo, H.-C., Ho, W.-Y., Simityan, H., Kuo, E., Praseuth, A., Watanabe, K., Oakley, B.R. & Wang, C.C. 2008 Molecular genetic mining of the Aspergillus secondary metabolome: discovery of the emericellamide biosynthetic pathway. Chem. Biol. 15:527-532

39. Chooi, Y.-H., Stalker, D.M., Davis, M.A., Fujii, I., Elix, J.A., Louwhoff. S.H.J.J. & Lawrie, A.C. 2008 Cloning and sequence characterization of a non-reducing polyketide synthase gene from the lichen Xanthoparmelia semiviridis. Mycol. Res. 112:147-161

40. Clutterbuck, A.J. & Farman, M. 2008 Aspergillus nidulans linkage map and genome sequence: closing gaps and adding telomeres. Ch 5 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 57-65

41. Clutterbuck, A.J., Kapitonov, V.V. & Jurka, J. 2008 Transposable elements and repeat-induced point mutation in Aspergillus nidulans, Aspergillus fumigatus and Aspergillus oryzae. Ch 20 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 343-355

42. Cohen, B.L. 2007 Guido Pontecorvo (“Ponte”): a centenary memoir. Genetics 177:1439-1444

43. Colombres, M., Garate, J.A., Lagos, C.F., Araya-Secchi, R., Norambuena, P., Quiroz, S., Larrondo, L., Pérez-Acle, T. & Eyzaguirre, J. 2008 An eleven amino acid residue deletion expands the substrate specificity of acetyl xylan esterase II (AXE II) from Penicillium purpurogenum. J. Computer-Aided Mol. Design 22:19-28

44. Coronado, J.E., Mneimneh, S., Epstein, S.L., Qui, W.-G. & Lipke, P.N. 2007 Conserved processes and lineage-specific proteins in fungal cell wall evolution. Eukaryot. Cell 6:2269-2277

45. Cowen, L.E. & Steinbach, W.J. 2008 Stress, drugs and evolution: the role of cellular signaling in fungal drug resistance. Eukaryot. Cell 7:747-764

46. Cramer, R.A.Jr., Perfect, B.Z., Pinchai, N., Park, S., Perlin, D.S., Asfaw, Y.G., Heitman, J., Perfect, J.R. & Steinbach, W.J. 2008 Calcineurin target CrzA regulates conidial germination, hyphal growth, and pathogenesis of Aspergillus fumigatus. Eukarot. Cell 7:1085-1097

47. Damveld, R.A., Franken, A., Arentshorst, M., Punt, P.J., Klis, F.M., van den Hondel, C.A.M.J.J. & Ram, A.F.J. 2008 A novel screening method for cell wall mutants in Aspergillus niger identifies UDP-galactopyranose mutase as an important protein in fungal wall biosynthesis. Genetics 178:873-881

48. David, H., Özcelik, I.S., Hofmann, G. & Nielsen, J. 2008 Analysis of Aspergillus nidulans metabolism at the genome-scale. BMC Genomics 9:163

49. de Gouvęa, P.F., Soriani, F.M., Malavazi, I., Savoldi, M., Goldman, M.H. de S., Loss, O., Bignell, E., Ferreira, M.E. de S. & Goldman, G.H. 2008 Functional characterization of the Aspergillus fumigatus PHO80 homologue. Fung. Genet. Biol. 45:1135-1146

50. De Lucas, J.R., Indiveri, C., Tonazzi, A., Perez, P., Giangregorio, N., Iacobazzi, V., Palmieri, F. 2008 Functional characterization of residues within the carnitine/acylcarnitine translocase RX2PANAAXF distinct motif. Mol. Memb. Biol. 25:152-163

51. De Maeseneire, S.L., Van Bogaert, I.N., Dauvrin, T., Soetaert, W.K. & Vandamme, E.J. 2007 Rapid isolation of fungal genomic DNA suitable for long distance PCR. Biotechnol. Lett. 29:1845-1855

52. Diallinas, G. 2008 Aspergillus transporters. Ch 18 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 301-320

53. Draht, O.W., Busch, S., Hofmann, K., Braus-Stromeyer, S., Helmstaedt, K., Goldman, G.H. & Braus, G.H. 2008 Amino acid supply of Aspergillus. Ch 11 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 143-175

54. Emri, T., Szilágyi, M., Justyák, A. & Pócsi, I. 2008 Heterotrimeric G protein mediated regulation of proteinase production in Aspergillus nidulans. Acta Microbiol. Immunol. Hung. 55:111-117

55. Endo, Y., Yokoyama, M., Morimoto, M., Shirai, K., Chikamatsu, G., Kato, N., Tsukagoshi, N., Kato, M. & Kobayashi, T. 2008 Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA. Biosci. Biotechnol. Biochem. 72:312-320

56. Erdei, É., Pusztahelyi, T., Miskei, M., Barna, T. & Pócsi, I. 2008 Characterization and heterologous expression of an age-dependent fungal/bacterial type chitinase of Aspergillus nidulans. Acta Microbiol. Immunol. Hung. 55:351-361

57. Espeso, E.A. & Osmani, S.A. 2008 Nuclear pore complex and transport in Aspergillus nidulans. Ch 16 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 261-277

58. Etxebeste, O., Ni, M., Garzia, A., Kwon, N.-J., Fischer, R., Yu, J-H., Espeso, E.A. & Ugalde, U. 2008 Basic-zipper-type transcription factor FlbB controls asexual development in Aspergillus nidulans. Eukaryot. Cell.  7:38-48

59. Fang, W., Pei, Y. & Bidochka, M.J. 2007 A regulator of a G protein signalling (RGS) gene, cag8, from the insect-pathogenic fungus Metarhizium anisopliae is involved in conidiation, virulence and hydrophobin synthesis. Microbiol. 153:1017-1025

60. Fecik, R.A. 2007 Natural product biosynthesis moves in vitro. Nature Chem. Biol. 3:531-532

61. Fedorova, N.D., Khaldi, N., Joardar, V.S., Maiti, R., Amadeo, P., Anderson, M.J., Crabtree, J., Silva, J.C., Badger, J. H., Albarraq, A., Angiuoli, S., Bussey, H., Bowyer, P., Cotty, P.J., Dyer, P.S., Egan, A., Galens, K., Fraser-Liggett, C.M., Haas, B.J., Inman, J.M., Kent, R., Lemieux, S., Malavazi, I., Orvis, J., Roemer, T., Ronning, C.M., Sundaram, J.P., Sutton, G., Turner, G., Venter, J.C., White, O.R., Whitty, B.R., Youngman, P., Wolfe, K.H., Goldman, G.H., Wortman, J.R., Jiang, B., Denning, D.W. & Nierman, W.C. 2008 Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLOS Genetics 4: e1000046

62. Fedorova, N.D., Nierman, W.C., Turner, G., Joardar, V., Maiti, R., Anderson, M.J., Denning, D.W. & 2008 A comparative view of the genome of Aspergillus fumigatus. Ch 3 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 25-42

63. Fekete, E., Padra, J., Szentirmai, A. & Karaffa, L. 2008 Lactose and D-galactose catabolism in the filamentous fungus Aspergillus nidulans.  Acta Microbiol. Immunol. Hung. 55:119-124

64. Fischer, R. 2008 Developmental biology. Sex and poison in the dark. [Comment on Entry 12] Science 320: 1430-1431

65. Fischer, R., Takeshita, N. & Doonan, J. 2008 Cytoskeleton, polarized growth, and cell cycle in Aspergillus nidulans. Ch 15 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 223-259

66. Fischer, R., Zekert, N. & Takeshita, N. 2008 Polarized growth in fungi - interplay between the cytoskeleton, positional markers and membrane domains. Mol. Microbiol. 68:813-826

67. Fleck, C.B. & Brock, M. 2008 Characterization of an acyl-CoA: carboxylate CoA-transferase from Aspergillus nidulans involved in proprionyl-CoA detoxification. Mol. Microbiol. 68:642-656

68. Fortwendel, J.R., Fuller, K.K., Stephens, T.J., Bacon, W.C., Askew, D.S. & Rhodes, J.C. 2008 Aspergillus fumigatus RasA regulates asexual development and cell wall integrity. Eukaryot. Cell 7:1530-1539

69. Fox, E.M. & Howlett, B.J. 2008 Biosynthetic gene clusters for epipolythiodioxopiperazines in filamentous fungi. Mycol. Res. 112:162-169

70. Freitas, J.S., Silva, E.M. & Rossi, A. 2007 Identification of nutrient-dependent changes in extracellular pH and acid phosphatase secretion in Aspergillus nidulans. Genet. Mol. Res. 6:721-729

71. Galindo, A., Hervás-Aguilar, A., Rodríguez-Galán, O., Vincent, O., Arst, H.N.Jr., Tilburn, J. & Peńalva, M.A. 2007 PalC, one of two Bro1 domain proteins in the fungal pH signalling pathway, localizes to cortical structures and binds Vps32. Traffic 8:1346-1364

72. Garcia-Estrada, C., Vaca, I., Fierro, F., Sjollema, K., Veenhuis, M. & Martin, J.F. 2008 The unprocessed preprotein form IATC103S of the isopenicillin N acyltransferase is transported inside peroxisomes and regulates its self-processing. Fungal Genet. Biol. 45:1043-1052

73. García-Pedrajas, M.D., Nadal, M., Kapa, L.B., Perlin, M.H., Andrews, D.L. & Gold, S.E. 2008 DelsGate, a robust and rapid gene deletion construction method. Fungal Genet. Biol. 45:379-388

74. García-Rico, R.O., Fierro, F., Mauriz, E., Gómez, A., Fernández-Bodega, M.A. & Martín, J.F. 2008 The heterotrimeric Gα protein Pga1 regulates biosynthesis of penicillin, chrysogenin and roquefortine in Penicillium chrysogenum. Microbiol. 154:3567-3578

75. Garscha, U., Jernerén, F., Chung, D., Keller, N.P., Hamberg, M., Oliw, E.H. 2007 Identification of dioxygenases required for Aspergillus development. Studies of products, stereochemistry, and the reaction mechanism. J. Biol. Chem. 282:34707-34718

76. Gent, M. & Lanthaler, K. 2008 Chemostats and microarrays. Ch 29 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 483-491

77. Garscha, U. & Oliw, E. 2008 Pichia expression and mutagenesis of 7,8-linoleate diol synthase change the dioxygenase and hydroperoxide isomerase. Biochem. Biophys. Res. Commun. 373:579-583

78. Gioti, A., Pradier, J.M., Fournier, E., le Pęcheur., Giraud, C., Debieu, D., Bach, J., leroux, P. & Levis, C. 2008 A Botrytis cinerea emopamil binding domain protein, required for full virulence, belongs to a eukaryotic superfamily which has expanded in euascomycetes. Eukaryot. Cell 7:368-378

79. Goudela, S., Reichard, U., Amillis, S. & Diallinas, G. 2008 Characterization and kinetics of the major purine transporters in Aspergillus fumigatus. Fungal Genet. Biol. 45:459-472

80. Grosse, C., Heinekamp, T., Kniemeyer, O., Gehrke, A. & Brakhage, A.A. 2008 Protein kinase A regulates growth, sporulation, and pigment formation in Aspergillus fumigatus. Appl. Env. Microbiol. 74:4923-4933

81. Grosse, V. & Krappmann, S. 2008 the asexual pathogen Aspergillus fumigatus expresses functional determinants of Aspergillus nidulans sexual development. Eukaryot. Cell 7:1724-1732

82. Gulshan, K. & Moye-Rowley, W.S. 2007 Multidrug resistance in fungi. Eukaryot. Cell 6:1933-1942

83. Hamann, A., Brust, D. & Osiewacz, H.D. 2008 Apoptosis pathways in fungal growth, development and ageing. Trends Microbiol. 16:276-283

84. Hammond, T.M., Andrewski, M.D., Roossinck, M.J. & Keller, N.P. 2008 Aspergillus mycoviruses are targets and suppressors of RNA silencing. Eukaryot. Cell 7:350-357

85. Hammond, T.M., Bok, J.W., Andrewski, M.D., Reyes-Domínguez, Y., Scazzocchio, C. & Keller, N.P. 2008 RNA silencing gene truncation in the filamentous fungus Aspergillus nidulans. Eukaryot. Cell 7:339-349

86. Hammond, T.M. & Keller, N.P. 2008 RNA silencing in the Aspergilli. Ch 13 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 197-209

87. Han, D.-M., Chae, K.-S. & Han, K.-H. 2008 Sexual development in Aspergillus nidulans. Ch 17 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 279-299

88. Han, K.-H., Kim, J.H., Moon, H., Kim, S., Lee, S.-S., Han, D.M., Jahng, K.Y. & Chae, K.-S. 2008 The Aspergillus nidulans esdC (early sexual development) gene is necessary for sexual development and is controlled by veA and a heterotrimeric G protein. Fungal Genet. Biol. 45:310-318

89. Harispe, L., Portela, C., Scazzocchio, C., Peńalva, M.A. & Gorfinkiel, L. 2008 Ras GTPase-activating protein regulation of actin cytoskeleton and hyphal polarity in Aspergillus nidulans. Eukaryot. Cell. 7:141-153

90. Harris, D.M., van der Krogt, Z., van Gulik, W.M., van Dijken, J.P. & Pronk, J.T. 2008 Formate as an auxiliary substrate for glucose-limited cultivation of Penicillium chrysogenum: impact on penicillin G production and biomass yield. Appl. Env. Microbiol. 74:5020-5025

91. Harris, S.D. 2008 Hyphal morphogenesis in Aspergillus nidulans. Ch 14 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 211-222

92. Hedayati, M.T., Pasqualotto, A.C., Warn, P.A., Bowyer, P. & Denning, D.W. 2007 Aspergillus flavus: human pathogen, allergen and mycotoxin producer. Microbiol. 153:1677-1692

93. Heitman, J. & Howlett, B. 2008 Fungal horizons: the Asilomar Fungal Genetics Conference 2007. Fungal Genet. Biol. 45:77-83

94. Helmstaedt, K., Laubinger, K., Vosskuhl, K., Bayram, Ö., Busch, S., Hoppert, M., Valerius, O., Seiler, S. & Braus, G.H. 2008 The nuclear migration protein NUDF/LIS1 forms a complex with NUDC and BNFA at spindle pole bodies. Eukaryot. Cell 7:1041-1052

95. Henry, C., Mouyna, I. & Latgé, J.-P. 1007 testing the efficacy of RNA interference constructs in Aspergillus fumigatus. Curr. Genet. 51:277-284

96. Hervás-Aguilar, A., Rodríguez, J.M., Tilburn, J., Arst, H.N.Jr. & Penalva, M.A. 2007 Evidence for the direct involvement of the proteasome in the proteolytic processing of the Aspergillus nidulans zinc finger transcription factor PacC. J. Biol. Chem. 282:34735-34747

97. Hey, P., Robson, G., Birch, M. & Bromley, M. 2008 Characterization of Aft1 a Fot/Pogo type transposon of Aspergillus fumigatus. Fungal Genet. Biol. 45:117-126

98. Hoff, B., Pöggeler, S. & Kück, U. 2008 Eighty years after its discovery, Fleming’s Penicillium strain discloses the secrets of its sex. Eukaryot. Cell 7:465-470

99. Hohl, T.M. & Feldmesser, M. 2007 Aspergillus fumigatus: principles of pathogenesis and host defense. Eukaryot. Cell 6:1953-1963

100. Hong, S.-Y. & Linz, J.E. 2008 Functional expression and subcellular localization of the aflatoxin pathway enzyme Ver-1 fused to enhanced green  fluorescent protein. Appl. Env. Microbiol. 74:6385-6396

101. Hortschansky, P., Eisendle, M., Al-Abdallah, Q., Schmidt, A.D., Bergmann, S., Thön, M., Kniemeyer, O., Abt, B., Seeber, B., Werner, E.R., Kato, M., Brakhage, A.A. & Haas, H. 2007 Interaction of HapX with the CCAAT-binding complex--a novel mechanism of gene regulation by iron. EMBO J. 26:3157-3168

102. Hubbard, M.A. & Kaminskyj, S.G. 2008 Rapid tip-directed movement of Golgi equivalents in growing Aspergillus nidulans hyphae suggests a mechanism for delivery of growth-related materials. Microbiol. 154:1544-1553

103. Hynes, M.J. 2008 Gluconeogenic carbon metabolism. Ch 10 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 129-142

104. Hynes, M.J., Murray, S.L., Khew, .S. & Davis, M.A. 2008 Genetic analysis of the role of peroxisomes in the utilization of acetate and fatty acids in Aspergillus nidulans. Genetics 178:1355-1369

105. Ichinomiya, M., Uchida, H., Koshi, Y., Ohta, A. & Horiuchi, H. 2007 A protein kinase C-encoding gene, pkcA, is essential to the viability of the filamentous fungus Aspergillus nidulans. Biosci. Biotechnol. Biochem. 71:2787-2799

106. Jackson-Hayes, L., Hill, T.W., Loprete, D.M., Fay, L.M., Gordon, B.S., Nkashama, S.A., Patel, R.K. & Sartain, C.V. 2008 Two GDP-mannose transporters contribute to hyphal form and cell wall integrity in Aspergillus nidulans. Microbiol. 154:2037-2047

107. Janus, D., Hoff, B., Hofmann, E. & Kück, U. 2007 An efficient fungal RNA-silencing system using the DsRed reporter gene. Curr. Genet. 73:962-970

108. Jiang, H., Ouyang, H., Zhou, H. & Jin, C. 2008 GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability of Aspergillus fumigatus. Microbiol. 154:2730-2739

109. Johnson, L. 2008 Iron and siderophores in fungal-host interactions. Mycol. Res. 112:170-183

110. Jones, M.G. 2007 The first filamentous fungal genome sequences; Aspergillus leads the way for essential everyday resources or dusty museum specimens? Microbiol. 153:1-6

111. Jřrgansen, T.R., vanKuyk, P.A., Poulsen, B.R., Ruijter, G.J.G., Visser, J. & Iversen, J.J.L. 2007 Glucose uptake and growth of glucose-limited chemostat cultures of Aspergillus niger and a disruptant lacking mstA, a high-affinity glucose transporter. Microbiol. 153:1963-1973

112. Juhász, A., Pfeiffer, I., Keszthelyi, A., Kucsera, J., Vágvölgyi, C. & Hamari, Z. 2008 Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b. FEMS Microbiol. Lett. 281:51-57

113. Jun, K.O., Yang, E.J., Lee, B.J., Park, J.R., Lee, J.H. & Choi, S.K. 2008 Functional equivalence of translation factor eIF5B from Candida albicans and Saccharomyces cerevisiae. Mol. Cells. 25:172-177

114. Juvvadi, P.R., Fortwendel, J.R., Pinchai, N., Perfect, B.Z., Heitman, J. & Steinbach, W.J. 2008 Calcineurin localizes to the hyphal septum in Aspergillus fumigatus: implications for septum formation and conidiophore development. Eukaryot. Cell 7:1606-1610

115. Kainz, E., Gallmetzer, A., Hatzl, C., Nett, J.H., Li, H., Schinko, T., Pachlinger, R., Berger, H., Reyes-Dominguez, Y., Bernreiter, A., Gerngross, T., Wildt, S. & Strauss, J. 2008 N-glycan modification in Aspergillus species. Appl. Env. Microbiol. 74:1076-1086

116. Kafer, E. & Chae, S.-K. 2008 uvsFRFC1, the large subunit of replication factor C in Aspergillus nidulans, is essential for DNA replication, functions in UV repair and is upregulated in response to MMS-induced DNA damage. Fung. Genet. Biol. 45:1227-1234

117. Kale, S.P., Milde, L., Trapp, M.K., Frisvad, J.C., Keller, N.P. & Bok, J.W. 2008 Requirement of LaeA for secondary metabolism and sclerotial production in Aspergillus flavus. Fung. Genet. Biol. 45:1422-1429

118. Kaminskyj, S., Jilkine, K., Szeghalmi, A. & Gough, K. 2008 high spatial resolution analysis of fungal cell biochemistry – bridging the analytical gap using synchrotron FTIR spectromicroscopy. FEMS Microbiol. Lett. 284:1-8

119. Katz, M.E., Bernardo, S.M. & Cheetham, B.F. 2008 The interaction of induction, repression and starvation in the regulation of extracellular proteases on Aspergillus nidulans: evidence for a role for CreA in the response to carbon starvation. Curr. Genet. 54:47-55

120. Kaya, A.D. & Kiraz, N. 2007 In vitro susceptibilities of Aspergillus spp. causing otomycosis to amphotericin B, voriconazole and itraconazole. Mycoses 50:447-450

121. Keays DA. 2007 Neuronal migration: unraveling the molecular pathway with humans, mice, and a fungus. Mammal. Genome 18:425-430

122. Khaldi, N. & Wolfe, K.H. 2008 Elusive Origins of the Extra Genes in Aspergillus oryzae. PLoS ONE 3:e3036 

123. Kim, I.-K., Yim, H.-S., Kim, M.-K., Kim, D.-W., Kim, Y.-M., Cha, S.-S. & Kang, S.-O. 2008 Crystal structure of a new type of NADPH-dependent quinone oxidoreductase (QOR2) from Escherichia coli. J. Mol. Biol. 379:372-384

124. Kim, J.H., Mahoney, N., Chan, K.L., Molyneux, R.J., May, G.S. & Campbell, B.C. 2008 Chemosensitization of fungal pathogens to antimicrobial agents using benzo analogs. FEMS Microbiol. Lett. 281: 64-72

125. Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J. & Stammers, D.K. 2008 Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA. J. Mol. Biol. 381:373-382

126. Kouskoumvekaki, I., Yang, Z., Jónsdóttir, S.O., Olsson, L. & Panagiotou, G. 2008 Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification. BMC Bioinformatics. 9:59.

127. Krappmann, S. 2008 Pathogenicity determinants and allergens. Ch 22 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 377-400

128. Kremer, A., Westrich, L. & Li, S.-M. 2007 A 7-dimethylallyltryptophan synthase from Aspergillus fumigatus: overproduction, purification and biochemical characterization. Microbiol. 153:3409-3416

129. Kronstad, J.W. 2007 Self-fertility: the genetics of sex in lonely fungi. Curr Biol. 17:R843-845

130. Kumar, A., Gaind, S. & Nain, L. 2008 Evaluation of thermophilic fungal consortium for paddy straw composting. Biodegrad. 19:395-402

131. Kuwano, T., Shirataki, C. & Itoh, Y. 2008 Comparison between polyethylene glycol- and polyethylenimine-mediated transformation of Aspergillus nidulans. Curr. Genet. 54:95-103

132. Lavín, J.L., Oguiza, J.A., Ramírez, L. & Pisabarro, A.G. 2008 Comparative genomics of the oxidative phosphorylation system in fungi. Fung. Genet. Biol. 45:1248-1256

133. Léchenne, B., Reichard, U., Zaugg, C., Fratti, M., Kunert, J., Boulat, O. & Monod, M. 2007 Sulphite efflux pumps in Aspergillus fumigatus and dermatophytes. Microbiol. 153:905-913

134. Lee, C.-Z., Liou, G.-Y. & Yuan, G.-F. 2006 Comparison of the aflR sequences of strains in Aspergillus section flavi. Microbiol. 152:161-170

135. Lee, D.W., Freitag, M., Selker, E.U. & Aramayo, R. 2008 A cytosine methyltransferase homologue is essential for sexual development in Aspergillus nidulans. PLoS ONE 3:e2531

136. Lee, S.C., Schmidtke, S.N., Dangott, L.J. & Shaw, B.D. 2008 Aspergillus nidulans ArfB plays a role in endocytosis and polarized growth. Eukaryot. Cell 7:1278-1288

137. Lee, S.C. & Shaw, B.D. 2008 Localization and function of ADP ribosylation factor A in Aspergillus nidulans. FEMS Microbiol. Lett. 283:216-222

138. Leeder, A.C. & Turner, G. 2008 Characterisation of Aspergillus nidulans polarisome component BemA. Fungal Genet. Biol. 45:897-911

139. Lessing, F., Kniemeyer, O., Wozniok, I., Loeffler, J., Kurzai, O., Haertl, A. & Brakhage, A.A. 2007 The Aspergillus fumigatus transcriptional regulator AfYap1 represents the major regulator for defense against reactive oxygen intermediates but is dispensable for pathogenicity in an intramucosal mouse infection model. Eukaryot. Cell 6:2290-2302

140. Levasseur, A., Piumi, F., Coutinho, P.M., Rancurel, C., Asther, M., Delattre, M., Henrissat, B., Pontarotti, P., Asther, M. & Record, E. 2008 FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet. Biol. 45:638-445

141. Levin, A.M., de Vries, R.P., Conesa, A., de Bekker, C., Talon, M., Menke, H.H., van Peij, N.N.M.E. & Wösten, H.A.B. 2007 Spatial differentiation in the vegetative mycelium of Aspergillus niger. Eukaryot. Cell 6:2311-2322

142. Li, C.Y., Li, J.B., Zhou, X.G., Zhang, S.S. & Xu, M.H. 2005 [Frequency and distribution of variable-number tandem repeats in the genome of Aspergillus nidulans]. [- Chinese, not seen] Acta Genetica Sinica. 32:538-544

143. Li, M., Müller, T.A., Fraser, B.A. & Hausinger, R.P. 2008 Characterization of active site variants of xanthine hydroxylase from Aspergillus nidulans. Arch. Biochem. Biophys. 470:44-53

144. Li, Y., Zhang, L., Zhou, H., Ouyang, H., Ming, J. & Jin, C. 2008 Deletion of the msdS/AfmsdC gene induces abnormal polarity and septation in Aspergillus fumigatus. Microbiol. 154:1960-1972

145. Liao, X-g., Fang, W.-g., Zhang, Y.-j., Fan, Y.-h., Wu, X.-w., Zhou, Q. & Pei, Y. 2008 Characterization of a highly active promoter, PBbgpd, in Beauveria bassiana. Curr. Microbiol. 57:121-126

146. Lima, J.F., Malavazi, I., Ferreira, M.E. da S., Savoldi, M., Mota, A.O.Jr., Capellaro, J.L., Goldman, M.H. de S. & Goldman, G.H. 2008 Functional characterization of the putative Aspergillus nidulans DNA damage binding protein homologue DdbA. Mol. Genet. Genom.: MGG. 279:239-253

147. Ma, H., Snook, L.A., Kaminskyj, S.G.W. & Dahms, T.E.S. 2005 Surface ultrastructure and elasticity in growing tips and mature regions of Aspergillus hyphae describe wall maturation. Microbiol. 151:3679-3688

148. Machida, M. 2008 The genome sequence of Aspergillus oryzae. Ch 6 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 75-84

149. Maggio-Hall, L.A., Lyne, P., Wolff, J.A. & Keller, N.P. 2008 A single acyl-CoA dehydrogenase is required for catabolism of isoleucine, valine and short-chain fatty acids in Aspergillus nidulans. Fungal Genet. Biol. 45:180-189

150. Malavazi, I., Lima, J.F., de Castro, P.A., Savoldi, M., Goldman, M.H. de S. & Goldman, G.H. 2008 Genetic interactions of the Aspergillus nidulans atmAATM homolog with different components of the DNA damage response pathway. Genetics 178:675-691

151. Marx, F., Binder, U., Leiter, É. & Pócsi, I. 2008 The Penicillium chrysogenum antifungal protein PAF, a promising tool for the development of new antifungal therapies and fungal cell biology studies. Cell. Mol. Life Sci. 65:445-454

152. May, G.S. 2008 Mitogen-activated protein kinase pathways in Aspergilli. Ch 9 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 121-127

153. McCluskey, K. 2008 Aspergillus at the Fungal Genetics Stock Center. Ch 32 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 527-535

154. Meyer, V., Arentshorst, M., van den Hondel, C.A.M.J.J. & Ram, A.F.J. 2008 The polarisome component SpaA localises to hyphal tips of Aspergillus niger and is important for polar growth. Fungal Genet. Biol. 45:152-164

155. Mizutani, O., Kudo, Y., Saito, A., Matsuura, T., Inoue, H., Abe, K. & Gomi, K. 2008 A defect of LigD (human Lig4 homolog) for nonhomologous end joining significantly improves efficiency of gene-targeting in Aspergillus oryzae. Fungal Genet. Biol. 45:878-889

156. Ng, C.A., Kato, Y., Tanokura, M. & Brownlee, R.T. 2008 Structural characterisation of PinA WW domain and a comparison with other group IV WW domains, Pin1 and Ess1. Biochim. Biophys. Acta 1784:1208-1214

157. Ni, M. & Yu, J.H. 2007 A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans. PLoS ONE 2:e970

158. Nielsen, M.L., de Jongh, W.A., Meijer, S.L., Nielsen, J. & Mortensen, U.H. 2007 Transient marker system for iterative gene targeting of a prototrophic fungus. Appl. Env. Microbiol. 73:7240-7245

159. Nielsen, J.B., Nielsen, M.L. & Mortensen, U.H. 2008 Transient disruption of non-homologous end-joining facilitates targeted genome manipulations in the filamentous fungus Aspergillus nidulans. Fungal Genet. Biol. 45:165-170

160. Novikova, O.S., Fet, V. & Blinov, A.G. 2007 [LTR retrotransposons from genomes of Aspergillus fumigatus and A. nidulans]. [Russian – not seen] Molekuliarnaia Biologiia 41:830-838

161. Oakley, B.R. & Xiang, X. 2008 Fluorescent labels for intracellular structures and organelles. Ch 31 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 513-525

162. Oddon, D.M., Diatloff, E. & Roberts, S.K. 2007 A CLC chloride channel plays an essential role in copper homeostasis in Aspergillus nidulans at increased extracellular copper concentrations. Biochim. Biophys. Acta. Biomemb. 1768:2466-2477

163. Oestreicher, N., Ribard, C. & Scazzocchio, C. 2008 The nadA gene of Aspergillus nidulans, encoding adenine deaminase, is subject to a unique regulatory pattern. Fungal Genet. Biol. 45:760-775

164. Olivas, I., Royuela, M., Romero, B., Monteiro, M.C., Mínguez. J.M., Laborda, F. & De Lucas, J.R. 2008 Ability to grow on lipids accounts for the fully virulent phenotype in neutropenic mice of Aspergillus fumigatus null mutants in the key glyoxylate cycle enzymes. Fungal Genet. Biol. 45:45-60

165. Olszewska, A., Król, K., Weglenski, P. & Dzikowska, A. 2007 Arginine catabolism in Aspergillus nidulans is regulated by the rrmA gene coding for the RNA-binding protein. Fungal Genet. Biol. 44:1285-1297

166. Osmani, S.A., Liu, H.-L., Hynes, M.J. & Oakley, B.R. 2008 Advances in gene manipulation using Aspergillus nidulans. Ch 30 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 493-511

167. Pantazopoulou, A. & Diallinas, G. 2007 Fungal nucleobase transporters. FEMS Microbiol. Rev. 31:657-675

168. Paoletti, M., Seymour, F.A., Alcocer, M.J., Kaur, N., Calvo, A.M., Archer, D.B. & Dyer, P.S. 2007 Mating type and the genetic basis of self-fertility in the model fungus Aspergillus nidulans. Curr. Biol. 17:1384-13489

169. Papageorgiou, I., Gournas, C., Vlanti, A., Amillis, S., Pantazopoulou, A. & Diallinas, G. 2008 Specific interdomain synergy in the UapA transporter determines its unique specificity for uric acid among NAT carriers. J. Mol. Biol. 382:1121-1135

170. Paukstelis, P.J. & Lambowitz, A.M. 2008 Identification and evolution of fungal mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity. Proc. Natl. Acad. Sci. USA. 105:6010-6015

171. Payne, G.A., Jiujiang, Y., Nierman, W.C., Machida, M., Bhatnagar, D., Cleveland, T.E. & Dean. R.A. 2008 A first glance at the genome sequence of Aspergillus flavus. Ch 2 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 15-23

172. Pel, H.J., de Winde, J.H., Archer, D.B., Dyer, P.S., Hofmann, G., Schaap, P.J., Turner, G., de Vries, R.P., Albang, R., Albermann, K., Andersen, M.R., Bendtsen, J.D., Benen, J.A.E., van den Berg, M., Breestraat, S., Caddick, M.X., Contreras, R., Cornell, M., Coutinho, P.M., Danchin, E.G.J., Debets, A.J.M., Dekker, P., van Dijck, P.W.M., van Dijk, A., Dijkhuizen, L., Driessen, A.J.M., d'Enfert, C., Geysens, S., Goosen, C., Groot, G.S.P., de Groot, P.W.J., Guillemette, T., Henrissat, B., Herweijer, M., van den Hombergh, J.P.T.W., van den Hondel, C.A.M.J.J., van der Heijden, R.T.J.M., van der Kaaij, R.M., Klis, F.M., Kools, H.J., Kubicek, C.P., van Kuyk, P.A., Lauber, J., Lu, X., van der Maarel, M.J.E.C., Meulenberg, R., Menke, H., Mortimer, M.A., Nielsen, J., Oliver, S.G., Olsthoorn, M., Pal, K., van Peij, N.N.M.E., Ram, A.F.J., Rinas, U., Roubos, J.A., Sagt, C.M.J., Schmoll, M., Sun, J., Ussery, D., Varga, J., Vervecken, W., van de Vondervoort, P.J.J., Wedler, H., Wösten, H.A.B., Zeng, A.-P., van Ooyen, A.J.J., Visser, J. & Stam, H. 2007 Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nature Biotechnol. 25:221-231

173. Peńa-Montes, C., González, A., Castro-Ochoa, D. & Farrés, A. 2008 Purification and biochemical characterization of a broad substrate specificity thermostable alkaline protease from Aspergillus nidulans. Appl. Microbiol. Biotechnol. 78:603-612

174. Peńalva, M.A., Tilburn, J., Bignell, E. & Arst, H.N.Jr. 2008 Ambient pH gene regulation in fungi: making connections. Trends Microbiol. 16:291-300

175. Peterson, S.W. 2008 Phylogenetic analysis of Aspergillus species using DNA sequences from four loci. Mycologia 100:205-226

176. Plummer, R., Bodkin, J., Power, D., Pantarat, N., Bubb, W.A., Kuchel, P.W. & Sorrell, T.C. 2007 Effect of caspofungin on metabolite profiles of Aspergillus species determined by nuclear magnetic resonance spectroscopy. Antimicrob. Agents Chemother. 51:4077-4084

177. Plumridge, A., Stratford, M., Lowe, K.C. & Archer, D.B. 2008 the weak-acid preservative sorbic acid is decarboxylated and detoxified by a phenylacrylic acid decarboxylase, PadA1, in the spoilage mold Aspergillus niger. Appl. Env. Microbiol. 74:550-552

178. Pöggeler, S., Hoff, B. & Kück, U. 2008 Asexual cephalosporin C producer Acremonium chrysogenum carries a functional mating type locus. Appl. Env. Microbiol. 74:6006-6016

179. Purschwitz, J., Müller, S., Kastner, C., Schöser, M., Haas, H., Espeso, E.A., Atoui, A., Calvo, A.M. & Fischer, R. 2008 Functional and physical interaction of blue- and red-light sensors in Aspergillus nidulans. Curr. Biol. 18:255-259

180. Pyrzak, W., Miller, K.Y. & Miller, B.L. 2008 mating type protein Mat1-2 from asexual Aspergillus fumigatus drives sexual reproduction in fertile Aspergillus nidulans. Eukaryot. Cell 7:1029-1040

181. Ramirez-Prado, J.H., Moore, G.G., Horn, B.W. & Carbone, I. 2008 Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus. Fung. Genet. Biol. 45:1292-1299

182. Reverberi, M., Zjalic, S., Ricelli, A., Punelli, F., Camera, E., Fabbri, C., Picardo, M., Fanelli, C. & Fabbri, A.A. 2008 Modulation of anitoxidant defense in Aspergillus parasiticus is involved in aflatoxin biosynthesis: a role for the ApyapA gene. Eukaryot. Cell 7:988-1000

183. Reyes-Dominguez, Y., Narendja, F., Berger, H., Gallmetzer, A., Fernandez-Martin, R., Garcia, I., Scazzocchio, C. & Strauss, J. 2008 Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter. Eukaryot. Cell 7:656-663

184. Richie, D.L., Fuller, K.K., Fortwendel, J., Miley, M.D., McCarthy, J.W., Feldmesser, M., Rhodes, J.C. & Askew, D. 2007 Unexpected link between metal ion deficiency and autophagy in Aspergillus fumigatus. Eukaryot. Cell 6:2437-2447

185. Rittenour, W.R., Harris, S.D. 2008 Characterization of Fusarium graminearum Mes1 reveals roles in cell-surface organization and virulence. Fungal Genet. Biol. 45:933-946

186. Rizzello, C.G., De Angelis, M., Di Cagno, R., Camarca, A., Silano, M., Losito, I., De Vincenzi, M., De Bari, M.D., Palmisano, F., Maurano, F., Gianfrani, C. & Gobbetti, M. 2007 Highly efficient gluten degradation by Lactobacilli and fungal proteases during food processing: new perspectives for celiac disease. Appl. Env. Microbiol. 73:4499-4507

187. Robellet, X., Flipphi, M., Pégot, S., McCabe, A.P. & Vélot, C. 2008 AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans. Biochem. J. 412:485-493

188. Rokas, A. & Galagan, J.E. 2008 Aspergillus nidulans genome and a comparative analysis of genome evolution in Aspergillus. Ch 4 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 43-55

189. Romani, L., Fallarino, F., De Luca, A., Montagnoli, C., D’Angelo, C., Zelante, T., Vacca, C., Bistoni, F., Fioretti, M.C., Grohmann, U., Segal, B.H. & Puccetti, P. 2008 Defective tryptophan catabolism underlies inflammation in mouse chronic granulomatous disease. Nature 451: 211-215

190. Romano, J., Nimrod, G., Ben-Tal, N., Shadkchan, Y., Baruch, K., Sharon, H. & Osherov, N. 2006 Disruption of the Aspergillus fumigatus ECM33 homologue results in rapid conidial germination, antifungal resistance and hypervirulence. Microbiol. 152:1919-1928

191. Ronen, R., Sharon, H., Levdansky, E., Romano, J., Shadkchan, Y. & Osherov, N. 2007 The Aspergillus nidulans pkcA gene is involved in polarized growth, morphogenesis and maintenance of wall integrity. Curr. Genet. 51:321-329

192. Roy, P., Lockington, R.A. & Kelly, J.M. 2008 CreA-mediated repression in Aspergillus nidulans does not require transcriptional auto-regulation, regulated intracellular localisation or degradation of CreA. Fungal Genet. Biol. 45:657-670

193. Roze, L.V., Arthur, A.E., Hong, S.-Y., Chanda, A. & Linz, J.E. 2007 The initiation and pattern of spread of histone H4 acetylation parallels the order of transcriptional activation of genes in the aflatoxin cluster. Mol. Microbiol. 66:713-726

194. Roze, L.V., Beaudry, R.M., Arthur, A.E., Calvo, A.M. & Linz, J.E. 2007 Aspergillus volatiles regulate aflatoxin synthesis and asexual sporulation in Aspergillus parasiticus. Appl. Env. Microbiol. 73:7268-7276

195. Sakamoto, K., Arima, T.-h., Iwashita, K., Yamada, O., Gomi, K. & Akita, O. 2008 Aspergillus oryzae atfB encodes a transcription factor required for stress tolerance in conidia. Fungal Genet. Biol. 45:922-932

196. Sánchez-Ferrero, J.C. & Peńalva, M.A. 2008 Endocytosis. Ch 12 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 177-195

197. Sasse, C., Bignell, E.M., Hasenberg, M., Hayes, K., Gunzeer, M., Braus, G.H. & Krappmann, S. 2008 Basal expression of the Aspergillus fumigatus transcriptional activator CpcA is sufficient to support pulmonary aspergillosis. Fungal Genet. Biol. 45:693-704

198. Savoldi, M., Malavazi, I., Soriani, F.M., Capellaro, J.L., Kitamoto, K., Ferreira, M.E. de S., Goldman, M.H.S. & Goldman, G.H. 2008 Farnesol induces transcriptional accumulation of the Aspergillus nidulans Apoptosis-Inducing Factor (AIF)-like mitochondrial oxidoreductases. Mol. Microbiol. 70:44-59

199. Scazzocchio, C. & Ramón, A. 2008 Chromatin in the genus Aspergillus. Ch 19 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 321-342

200. Schmalhorst, P.S., Krappmann, S., Vervecken, W., Rohde, M., Müller, M., Braus, G.H., Contreras, R., Braun, A., Bakker, H. & Routier, F.H. 2008 Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus. Eukaryot. Cell 7:1268-1277

201. Schmidt-Heydt, M., Magan, N. & Geisen, R. 2008 Stress induction of mycotoxin biosynthesis genes by abiotic factors. FEMS Microbiol. Lett. 284:142-149

202. Schneider, P., Weber, M. & Hoffmeister, D. 2008 The Aspergillus nidulans enzyme TdiB catalyzes prenyltransfer to the precursor of bioactive asterriquinones. Fungal Genet. Biol. 45:302-309

203. Schrettl, M., Kim, H.S., Eisendle, M., Kragl, C., Nierman, W.C., Heinekamp, T., Werner, E.R., Jacobsen, I., Illmer, P., Yi, H., Brakhage, A.A. & Haas, H. 2008 SreA-mediated iron regulation in Aspergillus fumigatus. Mol. Microbiol. 70:27-43

204. Schwab, E.K. & Keller, N.P. 2008 Regulation of secondary metabolite production in filamentous ascomycetes. Mycol. Res. 112:225-230

205. Scully, L.R. & Bidochka, M.J. 2006 A cysteine/methionine auxotroph of the opportunistic fungus Aspergillus flavus is associated with host-range restriction; a model for emerging diseases. Microbiol. 152:223-232

206. Semighini, C.P. & Harris, S.D. 2008 Regulation of apical dominance in Aspergillus nidulans hyphae by reactive oxygen species. Genetics 179:1919-1932

207. Shafran, H., Miyara, I., Eshed, R., Prusky, D. & Sherman, A. 2008 Development of new tools for studying gene function in fungi based on the  gateway system. Fung. Genet. Biol. 45:1147-1154

208. Siemieniewicz, K.W. & Schrempf, H. 2007 Concerted responses between the chitin-binding protein secreting Streptomyces olivaceoviridis and Aspergillus proliferans. Microbiol. 153:593-600

209. Singh, B.K., Jetley, U.K., Sharma, R.K. & Garg, B.S. 2007 Synthesis, characterization and biological activity of complexes of 2-hydroxy-3,5-dimethylacetophenoneoxime (HDMAOX) with copper(II), cobalt(II), nickel(II) and palladium(II). Spectrochim. Acta A 68:63-73

210. Singh, R.S., Tiwary, A.K. & Bhari, R. 2008 Screening of Aspergillus species for occurrence of lectins and their characterization. J. Basic Microbiol. 48:112-117

211. Smith, C.A., Robertson, D., Yates, B., Nielsen, D.M., Brown, D., Dean, R. & Payne, G.A. 2008 The effect of temperature on natural antisense transcript (NAT) expression in Aspergillus flavus. Curr. Genet. 54:241-269

212. Soriani, F.M., Malavazi, I., Ferreira, M.E. da S., Savoldi, M., Kress, M.R. von Z., Goldman, M.H. de S., Loss, O., Bignell, E. & Goldman, G.H. 2008 Functional characterization of the Aspergillus fumigatus CRZ1 homologue, CrzA. Mol. Microbiol. 67:1274-1291

213. Souza-Júnior, S.A., Becker, T.C.A. & Castro-Prado, M.A.A. 2007 Asexual recombination in a uvsH mutant of Aspergillus nidulans. Biol. Res. 40:65-71

214. Spielvogel, A., Findon, H., Arst, H.N.Jr., Araújo-Bazán, L., Hernández-Ortíz, P., Stahl, U., Meyer, V. & Espeso, E.A. 2008 Two zinc finger transcription factors, CrzA and SltA, are involved in cation homoeostasis and detoxification in Aspergillus nidulans. Biochem. J. 414:419-429

215. Sprote, P. & Brakhage, A.A. 2007 The light-dependent regulator velvet A of Aspergillus nidulans acts as a repressor of the penicillin biosynthesis. Arch. Microbiol. 188:69-79

216. Spröte, P., Hynes, M.J., Hortschansky, P., Shelest, E., Scharf, D.H., Wolke, S.M. & Brakhage, A.A. 2008 Identification of the novel penicillin biosynthesis gene aatB of Aspergillus nidulans and its putative evolutionary relationship to this fungal secondary metabolism gene cluster. Mol. Microbiol. 70:445-461

217. Stack, D., Neville, C. & Doyle, S. 2007 Nonribosomal peptide synthesis in Aspergillus fumigatus and other fungi. Microbiol. 153:1297-1306

218. Stadler, M. & Keller, N.P. 2008 Paradigm shifts in fungal secondary metabolite research. Mycol. Res. 112:127-130

219. Steinbach, W.J. 2008 Clinical aspects of the genus Aspergillus. Ch 21 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 359-375

220. Stie, J. & Fox, D. 2008 Calcineurin regulation in fungi and beyond. Eukaryot. Cell 7:177-186

221. Stoll, L.B., Cremonesi, F.C.A., Pires, L.T.A., Zucchi, T.D. & Zucchi, T.M.A.D. 2008 Induction of mitotic crossing-over in diploid strains of Aspergillus nidulans using low-dose X-rays. Genet. Mol. Res. 7:467-475

222. Suzuki, A., Kanamaru, K., Azuma, N., Kato, M. & Kobayashi, T. 2008 GFP-tagged expression analysis revealed that some histidine kinases of Aspergillus nidulans show temporally and spatially different expression during the life cycle. Biosci. Biotechnol. Biochem. 72:428-434

223. Szeghalmi, A., Kaminskyj, S., Rosch, P., Popp, J. & Gough, K.M. 2007 Time fluctuations and imaging in the SERS spectra of fungal hypha grown on nanostructured substrates. J. Phys. Chem. B, 111:12916-12924

224. Tamano, K., Sano, M., Yamane, N., Terabayashi, Y., Toda, T., Sunagawa, M., Koike, H., Hatamoto, O., Umitsuki, G., Takahashi, T., Koyama, Y., Asai, R., Abe, K. & Machida, M. 2008 Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation. Fungal Genet. Biol. 45:139-151

225. Tamayo, E.N., Villanueva, A., Hasper, A.A., de Graaff, L.H., Ramón, D. & Orejas, M. 2008 CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans. Fung. Genet. Biol. 45:984-993

226. Thykaer, J., Rueksomtawin, K., Noorman, H. & Nielsen, J. 2008 NADPH-dependent glutamate dehydrogenase in Penicillium chrysogenum is involved in regulation of b-lactam production. Microbiol. 154:1242-1250

227. Tokuoka, M., Tanaka, M., Ono, K., Takagi, S., Shintani, T. & Gomi, K. 2008 Codon optimization increases steady-state mRNA levels in Aspergillus oryzae heterologous gene expression. Appl. Env. Microbiol. 74:6538-6546

228. Upadhyay, S. & Shaw, B.D. 2008 The role of actin, fimbrin and endocytosis in growth of hyphae in Aspergillus nidulans. Mol. Microbiol. 68:690-705

229. Valiente, V., Heinekamp, T., Jain, R., Härtl, A. & Brakhage, A.A. 2008 The mitogen-activated protein kinase MpkA of Aspergillus fumigatus regulates cell wall signaling and oxidative stress response. Fungal Genet. Biol. 45:618-627

230. van de Vondervoort, P.J.I., Langeveld, S.M.J., Visser, J., van Peij, N.N.M.E., Pel, H.J., van den Hondel, C.A.M.J.J. & Ram, A.F.J. 2007 Identification of a mitotic recombination hotspot on chromosome III of the asexual fungus Aspergillus niger and its possible correlation elevated basal transcription. Curr. Genet. 51:107-114, Erratum p. 275.

231. van der Kaaij, R.M., Janacek, S., van der Maarel, M.J.E.C. & Dijkhuizen, L. 2007 Phylogenetic and biochemical characterization of a novel cluster of intracellular fungal α-amylase enzymes. Microbiol. 153:4003-4015

232. Virag, A., Lee, M.P., Si, H. & Harris, S.D. 2007 Regulation of hyphal morphogenesis by cdc42 and rac1 homologues in Aspergillus nidulans. Mol. Microbiol. 66:1579-1596

233. Vlanti, A. & Diallinas, G. 2008 The Aspergillus nidulans FcyB cytosine-purine scavenger is highly expressed during germination and in reproductive compartments and is downregulated by endocytosis. Mol. Microbiol. 68:959-977

234. Wagener, J., Echtenacher, B., Rohde, M., Kotz, A., Krappmann, S., Heesemann, J. & Ebel, F. 2008 The putative α-1,2-mannosyltransferase AfMnt1 of the opportunistic fungal pathogen Aspergillus fumigatus is required for cell wall stability and full virulence. Euk. Cell 7:1661-1673

235. Wang, C.C.C., Chiang, Y.-M., Kuo, P.-L., Chang, J.-K. & Hsu, Y.L. 2008 Norsolorinic acid from Aspergillus nidulans inhibits the proliferation of human breast adenocarcinoma MCF-7 cells via Fas-mediated pathway. Basic Clin. Pharmacol. Toxicol. 102:491-497

236. Wang, Y., Li, W., Siddiqi, Y., Kinghorn, J.R., Unkles, S.E. & Glass, A.D. 2007 Evidence for post-translational regulation of NrtA, the Aspergillus nidulans high-affinity nitrate transporter. New Phytol. 175:699-706

237. Wang, Y., Li, W., Siddiqi, Y., Symington, V.F., Kinghorn, J.R., Unkles, S.E., & Glass, A.D.M. 2008 Nitrite transport is mediated by the nitrite-specific high-affinity NitA transporter and by nitrate transporters NrtA, NrtB in Aspergillus nidulans. Fungal Genet. Biol. 45:94-102

238. Wang, Y., Xue, W., Sims, A.H., Zhao, C., Wang, A., Tang, G., Qin, J. & Wang, H. 2008 Isolation of four pepsin-like protease genes from Aspergillus niger and analysis of the effect of disruptions on heterologous laccase expression. Fungal Genet. Biol. 45:17-27

239. Wong, K.H., Hynes, M.J. & Davis, M.A. 2008 Recent advances in nitrogen regulation: a comparison between Saccharomyces cerevisiae and filamentous fungi. Eukaryot. Cell 7:917-925

240. Wong, K.H., Todd, R.B., Oakley, B.R., Oakley, C.E., Hynes, M.J. & Davis, M.A. 2008 Sumoylation in Aspergillus nidulans: sumO inactivation, overexpression and live-cell imaging. Fungal Genet. Biol. 45:728-737

241. Wynshaw-Boris A. 2007 Lissencephaly and LIS1: insights into the molecular mechanisms of neuronal migration and development. Clin. Gen. 72:296-304

242. Yamazaki, H., Tanaka, A., Kaneko, J.-i., Ohta, A. & Horiuchi, H. 2008 Aspergillus nidulans ChiA is a glycosylphosphatidylinositol (GPI)-anchored chitinase specifically localized at polarized growth sites. Fung. Genet. Biol. 45:963-972

243. Yang, Y., El-Ganiny, A.M., Bray, G.E., Sanders, D.A. & Kaminskyj, S.G. 2008 Aspergillus nidulans hypB encodes a Sec7-domain protein important for hyphal morphogenesis. Fungal Genet. Biol. 45:749-759

244. Yoshinari, T., Akiyama, T., Nakamura, K., Kondo, T., Takahashi, Y., Muraoka, Y., Nonomura, Y., Nagasawa, H. & Sakuda, S. 2007 Dioctatin A is a strong inhibitor of aflatoxin production by Aspergillus parasiticus. Microbiol. 153:2774-2780

245. Yoshinari, T., Yaguchi, A., Takahashi-Ando, N., Kimura, M., Takahashi, H., Nakajima, T., Sugita-Konishi, Y., Nagasawa, H. & Sakuda, S. 2008 Spiroethers of German chamomile inhibit production of aflatoxin G1 and trichothecene mycotoxin by inhibiting cytochrome P450 monooxygenases involved in their biosynthesis. FEMS Microbiol. Lett. 284:184-190

246. Yu, J., Payne, G.A., Campbell, B.C., Guo, B., Cleveland, T.E., Robens, J.F., Keller, N.P., Bennett, J.W. & Nierman, W.C. 2008 Mycotoxin production and prevention of aflatoxin contamination in food and feed. Ch 27 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 457-472

247. Yu, J.-H. & d’Enfert, C. 2008 Signal transduction in Aspergilli. Ch 7 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 87-102

248. Yuan, X.-L., Goosen, C., Kools, H., van der Maarel, M.J.E.C., van den Hondel, C.A.M.J.J., Dijkhuizen, L. & Ram, A.F.J. 2006 Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger. Microbiol. 152:3061-3073

249. Yuan, X.-L., Roubos, J.A., van den Hondel, C.A.M.J.J. & Ram, A.F.J. 2008 Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulolytic genes in Aspergillus niger. Mol Genet. Genom. 279:11-26

250. Yuan, X.-L., van der Kaaij, R.M., van den Hondel, C.A.M.J.J., Punt, P.J., van der Maarel, M.J.E.C., Dijkhuizen, L. & Ram, A.F.J. 2008 Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles. Mol. Genet. Genom. 279:545-561

251. Yuvamoto, P.D. & Said, S. 2007 Germination, duplication cycle and septum formation are altered by caffeine, caffeic acid and cinnamic acid in Aspergillus nidulans. Mikrobiol. 76:830-833

252. Zaas, A.K. & Steinbach, W.J. 2008 Mammalian models of aspergillosis. Ch 23 in The Aspergilli: genomics, medical aspects, biotechnology, and research methods, ed. G.H. Goldman and S.A. Osmani, CRC Press, Boca Raton, pp 401-412

253. Zhang, J., Wang, L., Zhuang, L., Huo, L., Musa, S., Li, S. & Xiang, X. 2008 Arp11 affects dynein-dynactin interaction and is essential for dynein function in Aspergillus nidulans. Traffic.  9:1073-1087

254. Zhao, Q., Yuan, S., Wang, X., Zhang, Y., Zhu, H. & Lu, C. 2008 Restoration of mature etiolated cucumber hypocotyl cell wall susceptibility to expansin by pretreatment with fungal pectinase and EGFA in vitro. Plant Physiol. 147:1874-1885

255. Zhou, H., Hu, H., Zhang, L., Li, R., Ouyang, H., Ming, J. & Jin, C. 2007 O-mannosyltransferase 1 in Aspergillus fumigatus (Afpmt1p) is crucial for cell wall integrity and conidium morphology, especially at an elevated temperature. Eukaryot. Cell 6:2260-2268



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